NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,097.4 |
| Mean read quality |
14.4 |
| Median read length |
973.0 |
| Median read quality |
15.6 |
| Number of reads |
15,331.0 |
| Read length N50 |
1,008.0 |
| STDEV read length |
668.2 |
| Total bases |
16,823,500.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15331 (100.0%) 16.8Mb |
| >Q7 |
15331 (100.0%) 16.8Mb |
| >Q10 |
15324 (100.0%) 16.8Mb |
| >Q12 |
14050 (91.6%) 15.4Mb |
| >Q15 |
9140 (59.6%) 9.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
27.8 (166) |
| 2 |
27.0 (307) |
| 3 |
26.7 (150) |
| 4 |
26.6 (152) |
| 5 |
25.7 (200) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4987 (16.8) |
| 2 |
4712 (17.0) |
| 3 |
4636 (16.1) |
| 4 |
4448 (12.3) |
| 5 |
4435 (13.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot