11366479	4	AP001342.1-001
11366479	52	Havana
11366479	53	vega@sanger.ac.uk
11366479	428	tslNA
11366479	417	GENCODE basic
11366480	4	AP000235.3-001
11366480	52	Havana
11366480	53	vega@sanger.ac.uk
11366480	54	GENCODE experimental pipeline
11366480	123	50-odd residue CDS can be found but not annotated
11366480	123	exons 3 and 4 found using dotter
11366480	417	GENCODE basic
11366480	428	tsl3
11366481	4	AP000233.2-001
11366481	52	Havana
11366481	53	vega@sanger.ac.uk
11366481	54	GENCODE experimental pipeline
11366481	123	exons 1 and 2 found using dotter
11366481	428	tsl3
11366482	4	AP000233.2-002
11366482	52	Havana
11366482	53	vega@sanger.ac.uk
11366482	54	non canonical TEC
11366482	123	checked for SNPs at AT acceptor
11366482	123	exons 1 and 2 found using dotter
11366482	123	non-canonical splice acceptor site between exons 1 and 2
11366482	380	dotter confirmed
11366482	417	GENCODE basic
11366482	428	tsl5
11366483	62	1:284\	(3.(6.7(2.3(7.(3.(5.2(4.(2.2(.5).2)2.2)7.2)2.3)3.)9.6)6.3)3.36(.(3.6)4.13(4.8)2.)2.(3.4)3.13(4.33)4.12(4.10)4
11366483	417	GENCODE basic
11366483	428	tslNA
11366484	4	AP000233.3-001
11366484	52	Havana
11366484	53	vega@sanger.ac.uk
11366484	54	GENCODE experimental pipeline
11366484	123	exon 4 found using dotter
11366484	417	GENCODE basic
11366484	428	tsl3
11366485	4	AP000233.4-001
11366485	52	Havana
11366485	53	vega@sanger.ac.uk
11366485	54	GENCODE experimental pipeline
11366485	417	GENCODE basic
11366485	428	tsl3
11366486	62	1:109\	.13(5.(2.3(2.2(4.(2.5)2.2)4.2)2.4)2.)3.2)2.43
11366486	417	GENCODE basic
11366486	428	tslNA
11366487	62	1:95\	(3.(3.(3.(7.(8.(3.6(5.6)5.2)3.)8.2)7.)6.)3.7
11366487	15	59-80
11366487	428	tslNA
11366487	417	GENCODE basic
11366488	4	AP001340.2-001
11366488	52	Havana
11366488	53	vega@sanger.ac.uk
11366488	54	GENCODE experimental pipeline
11366488	123	not given the name RPL13AP as this maps to chr. 6 in Entrez Gene
11366488	417	GENCODE basic
11366488	428	tslNA
11366489	4	AP001340.3-001
11366489	52	Havana
11366489	53	vega@sanger.ac.uk
11366489	417	GENCODE basic
11366489	428	tslNA
11366490	3	AP001348.2-001
11366490	4	AP001348.2-001
11366490	52	Havana
11366490	53	vega@sanger.ac.uk
11366490	54	novel transcript
11366490	428	tsl1
11366491	3	AP001348.2-002
11366491	4	AP001348.2-002
11366491	52	Havana
11366491	53	vega@sanger.ac.uk
11366491	54	novel transcript
11366491	417	GENCODE basic
11366491	428	tsl1
11366492	3	AP001348.2-004
11366492	4	AP001348.2-004
11366492	52	Havana
11366492	53	vega@sanger.ac.uk
11366492	54	novel transcript
11366492	417	GENCODE basic
11366492	428	tsl3
11366493	3	AP001348.2-003
11366493	4	AP001348.2-003
11366493	52	Havana
11366493	53	vega@sanger.ac.uk
11366493	54	novel transcript
11366493	428	tsl3
11366494	15	75-95
11366494	62	1:107\	.15(8.(9.4(5.4)5.)9.3(12.5)12.6)8
11366494	428	tslNA
11366494	417	GENCODE basic
11366495	4	AP000221.1-001
11366495	52	Havana
11366495	53	vega@sanger.ac.uk
11366495	54	GENCODE experimental pipeline
11366495	123	extended 3' using Em:BU740841.1 as it is matched to Em:BM727288.1
11366495	417	GENCODE basic
11366495	428	tsl3
11366496	3	AP000223.5-001
11366496	4	AP000223.5-001
11366496	52	Havana
11366496	53	vega@sanger.ac.uk
11366496	417	GENCODE basic
11366496	428	tsl5
11366497	15	4-26
11366497	15	43-64
11366497	62	1:65\	(14.(3.(8.(3.4)3.2)25
11366497	417	GENCODE basic
11366497	428	tslNA
11366498	4	AP000223.42-001
11366498	52	Havana
11366498	53	vega@sanger.ac.uk
11366498	417	GENCODE basic
11366498	428	tslNA
11366499	3	AP000223.6-001
11366499	4	AP000223.6-001
11366499	52	Havana
11366499	53	vega@sanger.ac.uk
11366499	54	FLJ20451
11366499	417	GENCODE basic
11366499	427	principal3
11366499	428	tsl1
11366499	535	NM_017446.3
11366500	3	AP000223.6-002
11366500	4	AP000223.6-002
11366500	52	Havana
11366500	53	vega@sanger.ac.uk
11366500	417	GENCODE basic
11366500	427	alternative2
11366500	428	tsl5
11366501	127	1
11366501	53	vega@sanger.ac.uk
11366501	52	Havana
11366501	4	AP000223.6-003
11366501	3	AP000223.6-003
11366501	125	1
11366501	428	tsl5
11366501	427	alternative2
11366502	3	AP000226.2-003
11366502	4	AP000226.2-003
11366502	52	Havana
11366502	53	vega@sanger.ac.uk
11366502	417	GENCODE basic
11366502	427	alternative2
11366502	428	tsl1
11366503	3	AP000226.2-001
11366503	4	AP000226.2-001
11366503	52	Havana
11366503	53	vega@sanger.ac.uk
11366503	417	GENCODE basic
11366503	427	principal3
11366503	428	tsl1
11366504	3	AP000226.2-007
11366504	4	AP000226.2-007
11366504	52	Havana
11366504	53	vega@sanger.ac.uk
11366504	123	possible target for nonsense-mediated decay
11366504	123	Translation removed and type set to NMD
11366504	124	1
11366504	126	1
11366504	428	tsl3
11366505	3	AP000226.2-006
11366505	4	AP000226.2-006
11366505	52	Havana
11366505	53	vega@sanger.ac.uk
11366505	428	tsl3
11366506	3	AP000226.2-008
11366506	4	AP000226.2-008
11366506	52	Havana
11366506	53	vega@sanger.ac.uk
11366506	428	tsl3
11366507	3	AP000226.2-009
11366507	4	AP000226.2-009
11366507	52	Havana
11366507	53	vega@sanger.ac.uk
11366507	428	tsl2
11366508	417	GENCODE basic
11366508	428	tsl2
11366509	4	AP000223.41-001
11366509	52	Havana
11366509	53	vega@sanger.ac.uk
11366509	428	tslNA
11366509	417	GENCODE basic
11366510	3	AP000225.2-001
11366510	4	AP000225.2-001
11366510	52	Havana
11366510	53	vega@sanger.ac.uk
11366510	54	GENCODE experimental pipeline
11366510	417	GENCODE basic
11366510	428	tslNA
11366511	3	AP000226.7-004
11366511	4	AP000226.7-004
11366511	52	Havana
11366511	53	vega@sanger.ac.uk
11366511	428	tsl5
11366511	417	GENCODE basic
11366512	3	AP000226.7-007
11366512	4	AP000226.7-007
11366512	52	Havana
11366512	53	vega@sanger.ac.uk
11366512	54	alternative 5' UTR
11366512	428	tsl2
11366512	417	GENCODE basic
11366512	427	principal1
11366513	3	AP000226.7-001
11366513	4	AP000226.7-001
11366513	52	Havana
11366513	53	vega@sanger.ac.uk
11366513	54	DKFZp566A221
11366513	428	tsl1
11366513	417	GENCODE basic
11366513	427	principal1
11366514	3	AP000226.7-003
11366514	4	AP000226.7-003
11366514	52	Havana
11366514	53	vega@sanger.ac.uk
11366514	54	alternative 5' UTR
11366514	54	NP_001003701
11366514	428	tsl2
11366514	417	GENCODE basic
11366515	3	AP000226.7-005
11366515	4	AP000226.7-005
11366515	52	Havana
11366515	53	vega@sanger.ac.uk
11366515	54	alternative 5' UTR
11366515	417	GENCODE basic
11366515	427	principal1
11366515	428	tsl2
11366516	3	AP000226.7-006
11366516	4	AP000226.7-006
11366516	52	Havana
11366516	53	vega@sanger.ac.uk
11366516	54	alternative 5' UTR
11366516	428	tsl2
11366516	417	GENCODE basic
11366516	427	principal1
11366517	3	AP000226.7-002
11366517	4	AP000226.7-002
11366517	52	Havana
11366517	53	vega@sanger.ac.uk
11366517	54	alternative 5' UTR
11366517	428	tsl1
11366517	417	GENCODE basic
11366517	427	principal1
11366518	3	AP000226.7-008
11366518	4	AP000226.7-008
11366518	52	Havana
11366518	53	vega@sanger.ac.uk
11366518	428	tsl2
11366519	54	alternative 5' UTR
11366519	53	vega@sanger.ac.uk
11366519	3	AP000226.8-002
11366519	4	AP000226.8-002
11366519	52	Havana
11366519	54	DKFZp686G2131
11366519	428	tsl1
11366519	417	GENCODE basic
11366519	427	principal1
11366520	52	Havana
11366520	4	AP000226.8-001
11366520	3	AP000226.8-001
11366520	53	vega@sanger.ac.uk
11366520	428	tsl1
11366520	417	GENCODE basic
11366520	427	principal1
11366520	535	NM_002040.4
11366521	53	vega@sanger.ac.uk
11366521	52	Havana
11366521	4	AP000226.8-003
11366521	3	AP000226.8-003
11366521	428	tsl2
11366522	4	AP000226.9-001
11366522	52	Havana
11366522	53	vega@sanger.ac.uk
11366522	54	GENCODE experimental pipeline
11366522	417	GENCODE basic
11366522	428	tslNA
11366523	3	AP001443.4-004
11366523	4	AP001443.4-004
11366523	52	Havana
11366523	53	vega@sanger.ac.uk
11366523	123	CCDS13576.1
11366523	417	GENCODE basic
11366523	427	principal3
11366523	428	tsl1
11366524	3	AP001443.4-002
11366524	4	AP001443.4-002
11366524	52	Havana
11366524	53	vega@sanger.ac.uk
11366524	123	CCDS46638.1
11366524	417	GENCODE basic
11366524	428	tsl1
11366525	3	AP001443.4-003
11366525	4	AP001443.4-003
11366525	52	Havana
11366525	53	vega@sanger.ac.uk
11366525	123	CCDS13577.1
11366525	417	GENCODE basic
11366525	428	tsl1
11366526	3	AP001443.4-001
11366526	4	AP001443.4-001
11366526	52	Havana
11366526	53	vega@sanger.ac.uk
11366526	123	CCDS33523.1
11366526	417	GENCODE basic
11366526	427	alternative2
11366526	428	tsl1
11366527	3	AP001443.4-016
11366527	4	AP001443.4-016
11366527	52	Havana
11366527	53	vega@sanger.ac.uk
11366527	123	CCDS56212.1
11366527	417	GENCODE basic
11366527	428	tsl2
11366528	3	AP001443.4-015
11366528	4	AP001443.4-015
11366528	52	Havana
11366528	53	vega@sanger.ac.uk
11366528	123	CCDS46639.1
11366528	417	GENCODE basic
11366528	428	tsl1
11366529	3	AP001443.4-012
11366529	4	AP001443.4-012
11366529	52	Havana
11366529	53	vega@sanger.ac.uk
11366529	428	tsl1
11366530	3	AP001443.4-017
11366530	4	AP001443.4-017
11366530	52	Havana
11366530	53	vega@sanger.ac.uk
11366530	123	CCDS56213.1
11366530	417	GENCODE basic
11366530	427	alternative2
11366530	428	tsl5
11366531	3	AP001443.4-005
11366531	4	AP001443.4-005
11366531	52	Havana
11366531	53	vega@sanger.ac.uk
11366531	123	LoutreTransfer: start phase 2 is translateable whereas 0 was not
11366531	124	1
11366531	126	1
11366531	428	tsl1
11366532	3	AP001443.4-010
11366532	4	AP001443.4-010
11366532	52	Havana
11366532	53	vega@sanger.ac.uk
11366532	123	LoutreTransfer: start phase 2 is translateable whereas 0 was not
11366532	124	1
11366532	125	1
11366532	126	1
11366532	127	1
11366532	428	tsl3
11366533	3	AP001443.4-009
11366533	4	AP001443.4-009
11366533	52	Havana
11366533	53	vega@sanger.ac.uk
11366533	428	tsl2
11366534	3	AP001443.4-013
11366534	4	AP001443.4-013
11366534	52	Havana
11366534	53	vega@sanger.ac.uk
11366534	428	tsl1
11366535	3	AP001443.4-008
11366535	4	AP001443.4-008
11366535	52	Havana
11366535	53	vega@sanger.ac.uk
11366535	428	tsl2
11366536	3	AP001443.4-014
11366536	4	AP001443.4-014
11366536	52	Havana
11366536	53	vega@sanger.ac.uk
11366536	123	5472_A06.seq.Contig1
11366536	123	5472_A07.seq.Contig1
11366536	123	5472_B08.seq.Contig1
11366536	123	5472_C07.seq.Contig1
11366536	123	5472_C08.seq.Contig1
11366536	123	5472_D08.seq.Contig1
11366536	123	5472_E08.seq.Contig1
11366536	123	5472_F08.seq.Contig1
11366536	123	5472_G08.seq.Contig1
11366536	123	5472_H07.seq.Contig1
11366536	123	5472_H08.seq.Contig1
11366536	123	6123_A05.seq.Contig1
11366536	123	6123_A06.seq.Contig1
11366536	123	6123_B05.seq.Contig1
11366536	123	6123_B06.seq.Contig1
11366536	123	6123_C05.seq.Contig1
11366536	123	6123_C06.seq.Contig1
11366536	123	6123_D05.seq.Contig1
11366536	123	6123_D06.seq.Contig1
11366536	123	6123_E05.seq.Contig1
11366536	123	6123_E06.seq.Contig1
11366536	123	6123_F05.seq.Contig1
11366536	123	6123_F06.seq.Contig1
11366536	123	6123_G05.seq.Contig1
11366536	123	6123_G06.seq.Contig1
11366536	123	6123_H05.seq.Contig1
11366536	123	6123_H06.seq.Contig1
11366536	123	af2 7/6/07
11366536	123	exon 1 is not open in any frame - only possible ATG is internal to exon 4 of -001
11366536	123	supported by extension RACEfrags:
11366536	428	tsl2
11366537	3	AP001443.4-007
11366537	4	AP001443.4-007
11366537	52	Havana
11366537	53	vega@sanger.ac.uk
11366537	428	tsl2
11366538	3	AP001443.4-006
11366538	4	AP001443.4-006
11366538	52	Havana
11366538	53	vega@sanger.ac.uk
11366538	428	tsl3
11366539	417	GENCODE basic
11366539	428	tsl2
11366540	4	AP001442.2-007
11366540	52	Havana
11366540	53	vega@sanger.ac.uk
11366540	123	H9VBWKP02IV311
11366540	380	nested 454 RNA-Seq supported
11366540	417	GENCODE basic
11366540	428	tsl5
11366541	4	AP001442.2-001
11366541	52	Havana
11366541	53	vega@sanger.ac.uk
11366541	54	GENCODE experimental pipeline
11366541	123	Automatic annotation transfer from chr21-04: exon OTTHUME00002269414 has been altered
11366541	123	H9VBWKP02GRX1C
11366541	123	H9VBWKP02ID9CS
11366541	124	1
11366541	380	nested 454 RNA-Seq supported
11366541	428	tsl3
11366542	4	AP001442.2-002
11366542	52	Havana
11366542	53	vega@sanger.ac.uk
11366542	123	HEHD27I01BU5L3
11366542	123	HEX6GYL02H49Q4
11366542	123	psl_CRG_3prime_testis_97_98_99
11366542	380	RNA-Seq supported only
11366542	417	GENCODE basic
11366542	428	tsl5
11366543	4	AP001442.2-006
11366543	52	Havana
11366543	53	vega@sanger.ac.uk
11366543	123	HEX6GYL02JFA3H
11366543	123	psl_CRG_5prime_testis_97_98_99
11366543	380	RNA-Seq supported only
11366543	428	tsl5
11366544	4	AP001442.2-003
11366544	52	Havana
11366544	53	vega@sanger.ac.uk
11366544	123	HEHD27I01BUKXW
11366544	123	psl_CRG_3prime_testis_97_98_99
11366544	380	RNA-Seq supported only
11366544	428	tsl5
11366545	4	AP001442.2-004
11366545	52	Havana
11366545	53	vega@sanger.ac.uk
11366545	123	Extended at3' end based on HEHD27I01D8ZF7
11366545	123	HEHD27I01DUX2L
11366545	123	psl_CRG_3prime_testis_97_98_99
11366545	380	RNA-Seq supported only
11366545	417	GENCODE basic
11366545	428	tsl5
11366546	4	AP001442.2-005
11366546	52	Havana
11366546	53	vega@sanger.ac.uk
11366546	123	HEX6GYL02HV1HO
11366546	123	psl_CRG_5prime_testis_97_98_99
11366546	380	RNA-Seq supported only
11366546	428	tslNA
11366547	62	1:102\	.(4.5)4(6.28(3.(2.4)2.3)3.2(8.5)3.3)5.)6.3
11366547	417	GENCODE basic
11366547	428	tslNA
11366548	3	AP001053.9-001
11366548	4	AP001053.9-001
11366548	52	Havana
11366548	53	vega@sanger.ac.uk
11366548	417	GENCODE basic
11366548	427	principal1
11366548	428	tsl1
11366549	3	AP001053.9-002
11366549	4	AP001053.9-002
11366549	52	Havana
11366549	53	vega@sanger.ac.uk
11366549	428	tsl2
11366550	4	AP001342.1-001
11366550	52	Havana
11366550	53	vega@sanger.ac.uk
11366550	428	tslNA
11366550	417	GENCODE basic
11366551	4	AP000235.3-001
11366551	52	Havana
11366551	53	vega@sanger.ac.uk
11366551	54	GENCODE experimental pipeline
11366551	123	50-odd residue CDS can be found but not annotated
11366551	123	exons 3 and 4 found using dotter
11366551	417	GENCODE basic
11366551	428	tsl3
11366552	4	AP000233.2-001
11366552	52	Havana
11366552	53	vega@sanger.ac.uk
11366552	54	GENCODE experimental pipeline
11366552	123	exons 1 and 2 found using dotter
11366552	428	tsl3
11366553	4	AP000233.2-002
11366553	52	Havana
11366553	53	vega@sanger.ac.uk
11366553	54	non canonical TEC
11366553	123	checked for SNPs at AT acceptor
11366553	123	exons 1 and 2 found using dotter
11366553	123	non-canonical splice acceptor site between exons 1 and 2
11366553	380	dotter confirmed
11366553	417	GENCODE basic
11366553	428	tsl5
11366554	62	1:284\	(3.(6.7(2.3(7.(3.(5.2(4.(2.2(.5).2)2.2)7.2)2.3)3.)9.6)6.3)3.36(.(3.6)4.13(4.8)2.)2.(3.4)3.13(4.33)4.12(4.10)4
11366554	417	GENCODE basic
11366554	428	tslNA
11366555	4	AP000233.3-001
11366555	52	Havana
11366555	53	vega@sanger.ac.uk
11366555	54	GENCODE experimental pipeline
11366555	123	exon 4 found using dotter
11366555	417	GENCODE basic
11366555	428	tsl3
11366556	4	AP000233.4-001
11366556	52	Havana
11366556	53	vega@sanger.ac.uk
11366556	54	GENCODE experimental pipeline
11366556	417	GENCODE basic
11366556	428	tsl3
11366557	62	1:109\	.13(5.(2.3(2.2(4.(2.5)2.2)4.2)2.4)2.)3.2)2.43
11366557	417	GENCODE basic
11366557	428	tslNA
11366558	62	1:95\	(3.(3.(3.(7.(8.(3.6(5.6)5.2)3.)8.2)7.)6.)3.7
11366558	15	59-80
11366558	428	tslNA
11366558	417	GENCODE basic
11366559	4	AP001340.2-001
11366559	52	Havana
11366559	53	vega@sanger.ac.uk
11366559	54	GENCODE experimental pipeline
11366559	123	not given the name RPL13AP as this maps to chr. 6 in Entrez Gene
11366559	417	GENCODE basic
11366559	428	tslNA
11366560	4	AP001340.3-001
11366560	52	Havana
11366560	53	vega@sanger.ac.uk
11366560	417	GENCODE basic
11366560	428	tslNA
11366561	3	AP001348.2-001
11366561	4	AP001348.2-001
11366561	52	Havana
11366561	53	vega@sanger.ac.uk
11366561	54	novel transcript
11366561	428	tsl1
11366562	3	AP001348.2-002
11366562	4	AP001348.2-002
11366562	52	Havana
11366562	53	vega@sanger.ac.uk
11366562	54	novel transcript
11366562	417	GENCODE basic
11366562	428	tsl1
11366563	3	AP001348.2-004
11366563	4	AP001348.2-004
11366563	52	Havana
11366563	53	vega@sanger.ac.uk
11366563	54	novel transcript
11366563	417	GENCODE basic
11366563	428	tsl3
11366564	3	AP001348.2-003
11366564	4	AP001348.2-003
11366564	52	Havana
11366564	53	vega@sanger.ac.uk
11366564	54	novel transcript
11366564	428	tsl3
11366565	15	75-95
11366565	62	1:107\	.15(8.(9.4(5.4)5.)9.3(12.5)12.6)8
11366565	428	tslNA
11366565	417	GENCODE basic
11366566	4	AP000221.1-001
11366566	52	Havana
11366566	53	vega@sanger.ac.uk
11366566	54	GENCODE experimental pipeline
11366566	123	extended 3' using Em:BU740841.1 as it is matched to Em:BM727288.1
11366566	417	GENCODE basic
11366566	428	tsl3
11366567	3	AP000223.5-001
11366567	4	AP000223.5-001
11366567	52	Havana
11366567	53	vega@sanger.ac.uk
11366567	417	GENCODE basic
11366567	428	tsl5
11366568	15	4-26
11366568	15	43-64
11366568	62	1:65\	(14.(3.(8.(3.4)3.2)25
11366568	417	GENCODE basic
11366568	428	tslNA
11366569	4	AP000223.42-001
11366569	52	Havana
11366569	53	vega@sanger.ac.uk
11366569	417	GENCODE basic
11366569	428	tslNA
11366570	3	AP000223.6-001
11366570	4	AP000223.6-001
11366570	52	Havana
11366570	53	vega@sanger.ac.uk
11366570	54	FLJ20451
11366570	417	GENCODE basic
11366570	427	principal3
11366570	428	tsl1
11366570	535	NM_017446.3
11366571	3	AP000223.6-002
11366571	4	AP000223.6-002
11366571	52	Havana
11366571	53	vega@sanger.ac.uk
11366571	417	GENCODE basic
11366571	427	alternative2
11366571	428	tsl5
11366572	127	1
11366572	53	vega@sanger.ac.uk
11366572	52	Havana
11366572	4	AP000223.6-003
11366572	3	AP000223.6-003
11366572	125	1
11366572	428	tsl5
11366572	427	alternative2
11366573	3	AP000226.2-003
11366573	4	AP000226.2-003
11366573	52	Havana
11366573	53	vega@sanger.ac.uk
11366573	417	GENCODE basic
11366573	427	alternative2
11366573	428	tsl1
11366574	3	AP000226.2-001
11366574	4	AP000226.2-001
11366574	52	Havana
11366574	53	vega@sanger.ac.uk
11366574	417	GENCODE basic
11366574	427	principal3
11366574	428	tsl1
11366575	417	GENCODE basic
11366575	428	tsl2
11366576	4	AP000223.41-001
11366576	52	Havana
11366576	53	vega@sanger.ac.uk
11366576	428	tslNA
11366576	417	GENCODE basic
11366577	3	AP000226.2-007
11366577	4	AP000226.2-007
11366577	52	Havana
11366577	53	vega@sanger.ac.uk
11366577	123	possible target for nonsense-mediated decay
11366577	123	Translation removed and type set to NMD
11366577	124	1
11366577	126	1
11366577	428	tsl3
11366578	3	AP000225.2-001
11366578	4	AP000225.2-001
11366578	52	Havana
11366578	53	vega@sanger.ac.uk
11366578	54	GENCODE experimental pipeline
11366578	417	GENCODE basic
11366578	428	tslNA
11366579	3	AP000226.2-006
11366579	4	AP000226.2-006
11366579	52	Havana
11366579	53	vega@sanger.ac.uk
11366579	428	tsl3
11366580	3	AP000226.2-008
11366580	4	AP000226.2-008
11366580	52	Havana
11366580	53	vega@sanger.ac.uk
11366580	428	tsl3
11366581	3	AP000226.2-009
11366581	4	AP000226.2-009
11366581	52	Havana
11366581	53	vega@sanger.ac.uk
11366581	428	tsl2
11366582	3	AP000226.7-004
11366582	4	AP000226.7-004
11366582	52	Havana
11366582	53	vega@sanger.ac.uk
11366582	428	tsl5
11366582	417	GENCODE basic
11366583	3	AP000226.7-007
11366583	4	AP000226.7-007
11366583	52	Havana
11366583	53	vega@sanger.ac.uk
11366583	54	alternative 5' UTR
11366583	428	tsl2
11366583	417	GENCODE basic
11366583	427	principal1
11366584	3	AP000226.7-001
11366584	4	AP000226.7-001
11366584	52	Havana
11366584	53	vega@sanger.ac.uk
11366584	54	DKFZp566A221
11366584	428	tsl1
11366584	417	GENCODE basic
11366584	427	principal1
11366585	3	AP000226.7-003
11366585	4	AP000226.7-003
11366585	52	Havana
11366585	53	vega@sanger.ac.uk
11366585	54	alternative 5' UTR
11366585	54	NP_001003701
11366585	428	tsl2
11366585	417	GENCODE basic
11366586	3	AP000226.7-005
11366586	4	AP000226.7-005
11366586	52	Havana
11366586	53	vega@sanger.ac.uk
11366586	54	alternative 5' UTR
11366586	417	GENCODE basic
11366586	427	principal1
11366586	428	tsl2
11366587	3	AP000226.7-006
11366587	4	AP000226.7-006
11366587	52	Havana
11366587	53	vega@sanger.ac.uk
11366587	54	alternative 5' UTR
11366587	428	tsl2
11366587	417	GENCODE basic
11366587	427	principal1
11366588	3	AP000226.7-002
11366588	4	AP000226.7-002
11366588	52	Havana
11366588	53	vega@sanger.ac.uk
11366588	54	alternative 5' UTR
11366588	428	tsl1
11366588	417	GENCODE basic
11366588	427	principal1
11366589	3	AP000226.7-008
11366589	4	AP000226.7-008
11366589	52	Havana
11366589	53	vega@sanger.ac.uk
11366589	428	tsl2
11366590	54	alternative 5' UTR
11366590	53	vega@sanger.ac.uk
11366590	3	AP000226.8-002
11366590	4	AP000226.8-002
11366590	52	Havana
11366590	54	DKFZp686G2131
11366590	428	tsl1
11366590	417	GENCODE basic
11366590	427	principal1
11366591	52	Havana
11366591	4	AP000226.8-001
11366591	3	AP000226.8-001
11366591	53	vega@sanger.ac.uk
11366591	428	tsl1
11366591	417	GENCODE basic
11366591	427	principal1
11366591	535	NM_002040.4
11366592	53	vega@sanger.ac.uk
11366592	52	Havana
11366592	4	AP000226.8-003
11366592	3	AP000226.8-003
11366592	428	tsl2
11366593	4	AP000226.9-001
11366593	52	Havana
11366593	53	vega@sanger.ac.uk
11366593	54	GENCODE experimental pipeline
11366593	417	GENCODE basic
11366593	428	tslNA
11366594	3	AP001443.4-004
11366594	4	AP001443.4-004
11366594	52	Havana
11366594	53	vega@sanger.ac.uk
11366594	123	CCDS13576.1
11366594	417	GENCODE basic
11366594	427	principal3
11366594	428	tsl1
11366595	3	AP001443.4-002
11366595	4	AP001443.4-002
11366595	52	Havana
11366595	53	vega@sanger.ac.uk
11366595	123	CCDS46638.1
11366595	417	GENCODE basic
11366595	428	tsl1
11366596	3	AP001443.4-003
11366596	4	AP001443.4-003
11366596	52	Havana
11366596	53	vega@sanger.ac.uk
11366596	123	CCDS13577.1
11366596	417	GENCODE basic
11366596	428	tsl1
11366597	3	AP001443.4-001
11366597	4	AP001443.4-001
11366597	52	Havana
11366597	53	vega@sanger.ac.uk
11366597	123	CCDS33523.1
11366597	417	GENCODE basic
11366597	427	alternative2
11366597	428	tsl1
11366598	417	GENCODE basic
11366598	428	tsl2
11366599	3	AP001443.4-016
11366599	4	AP001443.4-016
11366599	52	Havana
11366599	53	vega@sanger.ac.uk
11366599	123	CCDS56212.1
11366599	417	GENCODE basic
11366599	428	tsl2
11366600	3	AP001443.4-015
11366600	4	AP001443.4-015
11366600	52	Havana
11366600	53	vega@sanger.ac.uk
11366600	123	CCDS46639.1
11366600	417	GENCODE basic
11366600	428	tsl1
11366601	3	AP001443.4-012
11366601	4	AP001443.4-012
11366601	52	Havana
11366601	53	vega@sanger.ac.uk
11366601	428	tsl1
11366602	3	AP001443.4-017
11366602	4	AP001443.4-017
11366602	52	Havana
11366602	53	vega@sanger.ac.uk
11366602	123	CCDS56213.1
11366602	417	GENCODE basic
11366602	427	alternative2
11366602	428	tsl5
11366603	4	AP001442.2-007
11366603	52	Havana
11366603	53	vega@sanger.ac.uk
11366603	123	H9VBWKP02IV311
11366603	380	nested 454 RNA-Seq supported
11366603	417	GENCODE basic
11366603	428	tsl5
11366604	4	AP001442.2-001
11366604	52	Havana
11366604	53	vega@sanger.ac.uk
11366604	54	GENCODE experimental pipeline
11366604	123	Automatic annotation transfer from chr21-04: exon OTTHUME00002269414 has been altered
11366604	123	H9VBWKP02GRX1C
11366604	123	H9VBWKP02ID9CS
11366604	124	1
11366604	380	nested 454 RNA-Seq supported
11366604	428	tsl3
11366605	4	AP001442.2-002
11366605	52	Havana
11366605	53	vega@sanger.ac.uk
11366605	123	HEHD27I01BU5L3
11366605	123	HEX6GYL02H49Q4
11366605	123	psl_CRG_3prime_testis_97_98_99
11366605	380	RNA-Seq supported only
11366605	417	GENCODE basic
11366605	428	tsl5
11366606	4	AP001442.2-006
11366606	52	Havana
11366606	53	vega@sanger.ac.uk
11366606	123	HEX6GYL02JFA3H
11366606	123	psl_CRG_5prime_testis_97_98_99
11366606	380	RNA-Seq supported only
11366606	428	tsl5
11366607	4	AP001442.2-003
11366607	52	Havana
11366607	53	vega@sanger.ac.uk
11366607	123	HEHD27I01BUKXW
11366607	123	psl_CRG_3prime_testis_97_98_99
11366607	380	RNA-Seq supported only
11366607	428	tsl5
11366608	4	AP001442.2-004
11366608	52	Havana
11366608	53	vega@sanger.ac.uk
11366608	123	Extended at3' end based on HEHD27I01D8ZF7
11366608	123	HEHD27I01DUX2L
11366608	123	psl_CRG_3prime_testis_97_98_99
11366608	380	RNA-Seq supported only
11366608	417	GENCODE basic
11366608	428	tsl5
11366609	4	AP001442.2-005
11366609	52	Havana
11366609	53	vega@sanger.ac.uk
11366609	123	HEX6GYL02HV1HO
11366609	123	psl_CRG_5prime_testis_97_98_99
11366609	380	RNA-Seq supported only
11366609	428	tslNA
11366610	62	1:102\	.(4.5)4(6.28(3.(2.4)2.3)3.2(8.5)3.3)5.)6.3
11366610	417	GENCODE basic
11366610	428	tslNA
11366611	3	AP001443.4-005
11366611	4	AP001443.4-005
11366611	52	Havana
11366611	53	vega@sanger.ac.uk
11366611	123	LoutreTransfer: start phase 2 is translateable whereas 0 was not
11366611	124	1
11366611	126	1
11366611	428	tsl1
11366612	3	AP001443.4-010
11366612	4	AP001443.4-010
11366612	52	Havana
11366612	53	vega@sanger.ac.uk
11366612	123	LoutreTransfer: start phase 2 is translateable whereas 0 was not
11366612	124	1
11366612	125	1
11366612	126	1
11366612	127	1
11366612	428	tsl3
11366613	3	AP001443.4-009
11366613	4	AP001443.4-009
11366613	52	Havana
11366613	53	vega@sanger.ac.uk
11366613	428	tsl2
11366614	3	AP001053.9-001
11366614	4	AP001053.9-001
11366614	52	Havana
11366614	53	vega@sanger.ac.uk
11366614	417	GENCODE basic
11366614	427	principal1
11366614	428	tsl1
11366615	3	AP001053.9-002
11366615	4	AP001053.9-002
11366615	52	Havana
11366615	53	vega@sanger.ac.uk
11366615	428	tsl2
321133	54	Assembled from RACEseq reads
321133	537	1
321133	218	readthrough
321133	4	AP000326.5-003
321133	3	AP000326.5-003
321133	427	alternative2
307238	4	AF121897.5-001
307238	3	AF121897.5-001
307238	395	OTTHUMT00000497961
307238	218	readthrough
307238	380	RNA-Seq supported only
307238	417	GENCODE basic
307238	427	principal1
307238	554	1
307240	4	AF121897.5-002
307240	3	AF121897.5-002
307240	395	OTTHUMT00000497962
307240	218	readthrough
307240	380	RNA-Seq supported only