211 VB_Community_Symbol 1 KNOWN 50 VB Community Symbol MISC \N \N \N 212 VB_External_Description 1 PRED 50 VB External Description MISC \N \N \N 213 VB_RNA_Description 1 PRED 50 VB RNA Description MISC \N \N \N 230 Ribosomal_Protein_Gene_Database Dec.2010 XREF 50 Ribosomal Protein Gene DB MISC \N \N \N 250 ImmunoDB 1 KNOWN 50 ImmunoDB MISC \N \N \N 400 Celera_Gene 1 PRED 5 Celera gene MISC \N \N \N 410 Celera_Pep 1 PRED 5 Celera peptide MISC \N \N \N 420 Celera_Trans 1 PRED 5 Celera transcript MISC \N \N \N 700 EMBL 1 KNOWNXREF 5 European Nucleotide Archive MISC \N \N \N 701 EMBL_predicted 1 PRED 119 Predicted European Nucleotide Archive MISC \N \N \N 800 flybase_gene_id 1 KNOWNXREF 5 Flybase Gene MISC \N \N \N 801 flybase_translation_id 1 KNOWNXREF 5 Flybase translation ID MISC \N \N \N 804 flybase_annotation_id 1 KNOWNXREF 5 Flybase Annotation ID MISC \N \N \N 805 flybase_symbol 1 KNOWNXREF 50 Flybase Symbol MISC \N \N \N 808 flybase_transcript_id 1 KNOWNXREF 299 Flybase transcript ID MISC \N \N \N 812 gadfly_translation_cgid 1 XREF 10 Gadfly translation CGID MISC \N \N \N 821 FlyBaseName_gene 1 KNOWN 5 FlyBase gene name PRIMARY_DB_SYNONYM \N \N \N 824 FlyBaseName_translation 1 KNOWN 5 FlyBase translation name MISC \N \N \N 825 FlyBaseName_transcript 1 XREF 50 FlyBase transcript name MISC \N \N \N 826 FlyBaseCGID_gene 1 XREF 5 FlyBase gene CGID PRIMARY_DB_SYNONYM \N \N \N 827 FlyBaseCGID_transcript 1 XREF 50 FlyBase transcript CGID MISC \N \N \N 828 FlyBaseCGID_translation 1 XREF 50 FlyBase translation CGID MISC \N \N \N 829 BioGRID 1 KNOWNXREF 5 BioGRID Interaction data, The General Repository for Interaction Datasets MISC \N \N \N 831 GenomeRNAi 1 KNOWNXREF 5 GenomeRNAi, a database for cell-based RNAi phenotypes MISC \N \N \N 832 InteractiveFly 1 KNOWNXREF 5 The Interactive Fly MISC \N \N \N 833 MitoDrome 1 KNOWNXREF 5 Nuclear genes encoding proteins targeted to the mitochondrion MISC \N \N \N 883 FlyReactome 1 KNOWNXREF 5 FlyReactome, a Curated Knowledgebase of Drosophila Melanogaster Pathways MISC \N \N \N 1000 GO 151 XREF 5 GO MISC \N \N \N 1001 GO_REF 1 KNOWN 5 GO Reference Collection LIT \N \N \N 1100 HGNC 1 KNOWNXREF 100 HGNC Symbol PRIMARY_DB_SYNONYM \N \N \N 1200 Interpro 1 XREF 5 InterPro MISC \N \N \N 1300 EntrezGene 1 KNOWNXREF 250 EntrezGene PRIMARY_DB_SYNONYM \N \N \N 1400 MGI 1 KNOWNXREF 270 MGI Symbol PRIMARY_DB_SYNONYM \N \N \N 1510 MIM_GENE 1 KNOWNXREF 5 MIM gene MISC \N \N \N 1520 MIM_MORBID 1 KNOWNXREF 150 MIM morbid MISC \N \N \N 1600 PDB 1 KNOWNXREF 5 PDB MISC \N \N \N 1700 protein_id 1 KNOWNXREF 5 INSDC protein ID MISC \N \N \N 1701 protein_id_predicted 1 PRED 4 Predicted INSDC Protein ID MISC \N \N \N 1800 RefSeq_dna 1 KNOWN 200 RefSeq DNA MISC \N \N \N 1801 RefSeq_mRNA NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 KNOWN 200 RefSeq mRNA MISC \N \N \N 1803 RefSeq_ncRNA NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 KNOWN 200 RefSeq ncRNA MISC \N \N \N 1805 RefSeq_dna_predicted 1 PRED 199 RefSeq DNA predicted MISC \N \N \N 1806 RefSeq_mRNA_predicted NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 PRED 199 RefSeq mRNA predicted MISC \N \N \N 1808 RefSeq_ncRNA_predicted NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 PRED 199 RefSeq ncRNA predicted MISC \N \N \N 1810 RefSeq_peptide NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 KNOWN 210 RefSeq peptide MISC \N \N \N 1815 RefSeq_peptide_predicted NCBI Reference Sequence (RefSeq) Database Release 73, November 2, 2015 PRED 197 RefSeq peptide predicted MISC \N \N \N 1820 RefSeq_rna 1 KNOWN 230 RefSeq RNA MISC \N \N \N 1825 RefSeq_rna_predicted 1 PRED 195 RefSeq RNA predicted MISC \N \N \N 1830 RefSeq_genomic 1 KNOWN 193 RefSeq Genomic MISC \N \N This external_db_id can be used in the seq_region_synonym table. For species such as human, cow, dog we store chromosome names (1-22, X,Y) in the name column of the seq_region table. The RefSeq_genomic is stored as a synonym. eg. NC_000011.10, NT_187365.1 2000 Uniprot/SPTREMBL UniProtKB/TrEMBL Release 2015_12 of 09-Dec-2015 KNOWN 119 UniProtKB/TrEMBL MISC \N \N \N 2200 Uniprot/SWISSPROT UniProtKB/Swiss-Prot Release 2015_12 of 09-Dec-2015 KNOWN 220 UniProtKB/Swiss-Prot MISC \N \N \N 2202 Uniprot/Varsplic 1 KNOWN 15 UniProtKB/SpliceVariant MISC \N \N \N 2250 UniProtKB_all 1 XREF 40 UniProtKB generic accession number (TrEMBL or SwissProt not differentiated) MISC \N \N \N 2300 Vega_gene 1 KNOWNXREF 5 Vega gene MISC \N \N \N 2310 Vega_transcript 1 KNOWNXREF 160 Vega transcript MISC \N \N \N 2320 Vega_translation 1 KNOWNXREF 5 Vega translation MISC \N \N \N 2400 wormbase_gene 1 KNOWN 5 WormBase Gene MISC \N \N \N 2410 wormbase_transcript 1 KNOWN 5 WormBase Transcript MISC \N \N \N 2420 wormpep_id 1 KNOWN 5 Wormpep ID MISC \N \N \N 2440 wormbase_locus 1 KNOWN 5 WormBase Locus MISC \N \N \N 2510 ZFIN_ID 1 KNOWNXREF 260 ZFIN PRIMARY_DB_SYNONYM \N \N \N 2530 ZFIN_xpat 1 KNOWNXREF 4 ZFIN expression patterns MISC \N \N \N 2600 GeneDB 1 KNOWN 5 GeneDB MISC \N \N \N 2601 cint_jgi_v1 1 KNOWN 10 JGI Gene ID (JGI 1.0) MISC \N \N \N 2602 cint_jgi_v2 1 KNOWN 5 JGI Gene ID (JGI 2.0) MISC \N \N \N 2610 cint_aniseed_v1 1 KNOWN 5 ANISEED (JGI 1.0) MISC \N \N \N 2611 cint_aniseed_v2 1 KNOWN 5 ANISEED (JGI 2.0) MISC \N \N \N 2700 Ens_Hs_gene 1 XREF 5 Ensembl Human Gene MISC \N \N \N 2710 Ens_Hs_transcript 1 XREF 170 Ensembl Human Transcript MISC \N \N \N 2720 Ens_Hs_translation 1 XREF 5 Ensembl Human Translation MISC \N \N \N 2800 RGD 1 KNOWNXREF 50 RGD Symbol PRIMARY_DB_SYNONYM \N \N \N 2900 Genoscope_pred_gene 1 XREF 38 Genoscope pred gene MISC \N \N \N 2910 Genoscope_pred_transcript 1 XREF 39 Genoscope pred transcript MISC \N \N \N 2920 Genoscope_annotated_gene 1 KNOWN 40 Genoscope annotated gene MISC \N \N \N 2930 Genoscope_pred_translation 1 XREF 40 Genoscope pred translation MISC \N \N \N 2940 Genoscope_ann_transcript 1 KNOWN 40 Genoscope annotated transcript MISC \N \N \N 2950 Genoscope_ann_translation 1 KNOWN 40 Genoscope annotated translation MISC \N \N \N 3300 miRBase 1 KNOWNXREF 180 miRBase PRIMARY_DB_SYNONYM \N \N \N 3400 SGD 1 KNOWN 50 SGD PRIMARY_DB_SYNONYM \N \N \N 3500 IPI 1 KNOWN 5 IPI MISC \N \N \N 3800 CCDS 1 KNOWN 240 CCDS MISC \N \N \N 3900 PUBMED 1 KNOWN 5 Sequence Publications LIT \N \N \N 4100 UniGene 25 Apr 2013 \ , UniGene Build #236 Homo sapiens KNOWN 5 UniGene MISC \N \N \N 4200 RFAM 1 XREF 190 RFAM PRIMARY_DB_SYNONYM \N \N \N 4400 Xenbase 1 KNOWN 1 Xenbase PRIMARY_DB_SYNONYM \N \N \N 4600 OTTG 1 XREF 1 Havana gene ALT_GENE \N \N \N 4610 OTTT 1 XREF 1 Havana transcript ALT_TRANS \N \N \N 4620 OTTP 1 XREF 1 Havana translation MISC \N \N \N 4670 shares_CDS_with_OTTT 1 XREF 1 Havana transcript having same CDS ALT_TRANS \N \N \N 4680 shares_CDS_and_UTR_with_OTTT 1 XREF 1 Transcript having exact match between ENSEMBL and HAVANA ALT_TRANS \N \N \N 4690 ENSG 1 XREF 1 Ensembl gene ALT_GENE \N \N \N 4700 Medaka 1 XREF 1 Medaka Genome Project MISC \N \N \N 4810 ENST_ident 1 XREF 1 Ensembl transcript having exact match with Havana ALT_TRANS \N \N \N 4820 ENST_CDS 1 XREF 1 Ensembl transcript sharing CDS with Havana ALT_TRANS \N \N \N 5010 Ens_Mm_transcript 1 XREF 40 Ensembl Mouse Transcript MISC \N \N \N 5020 Ens_Mm_translation 1 XREF 40 Ensembl Mouse Translation MISC \N \N \N 5100 IMGT_HLA 1 KNOWN 7 IMGT/HLA MISC \N \N \N 5300 Oxford_FGU_Md_tscript 1 PRED 1 Oxford Ponting Group Monodelphis predictions transcript id MISC \N \N Updated from alt_gene to misc due to user query 5400 Oxford_FGU_Oa_gene 1 PRED 1 Oxford Ponting Group Platypus predictions gene id MISC \N \N Updated from alt_gene to misc due to user query 5500 Oxford_FGU_Oa_tscript 1 PRED 1 Oxford Ponting Group Platypus predictions transcript id MISC \N \N \N 5720 Ens_Cf_translation 1 XREF 5 Ensembl Dog Translation MISC \N \N \N 5810 Ens_Dr_transcript 1 XREF 5 Ensembl Zebrafish Transcript MISC \N \N \N 5820 Ens_Dr_translation 1 XREF 5 Ensembl Zebrafish Translation MISC \N \N \N 6400 Ens_Gg_gene 1 XREF 40 Ensembl Chicken Gene MISC \N \N \N 6410 Ens_Gg_transcript 1 XREF 40 Ensembl Chicken Transcript MISC \N \N \N 6420 Ens_Gg_translation 1 XREF 40 Ensembl Chicken Translation MISC \N \N \N 6500 IMCB_Tr_gene 1 XREF 40 IMCB Fugu Gene MISC \N \N \N 6820 Ens_Tr_transcript 1 XREF 40 Ensembl Fugu Transcript MISC \N \N \N 6900 Ens_Ga_translation 1 XREF 5 Ensembl Stickleback Translation MISC \N \N \N 7170 Ixodes_ManualAnnotation 1 PRED 30 Ixodes ManualAnnotation MISC \N \N \N 7180 VB_Community_Annotation 1 KNOWN 50 VB Community Annotation MISC \N \N \N 7200 IMGT/LIGM_DB 1 XREF 10 IMGT/LIGM-DB MISC \N \N \N 7201 IMGT/GENE_DB 1 KNOWN 40 IMGT/GENE-DB MISC \N \N \N 7300 Ens_Mg_transcript 1 XREF 40 Ensembl Turkey Transcript MISC \N \N \N 7400 Ens_Tg_transcript 1 XREF 40 Ensembl Zebrafinch Transcript MISC \N \N \N 7620 Ens_Fc_translation 1 XREF 40 Ensembl Cat Translation MISC \N \N \N 8100 Platypus_olfactory_receptor 1 XREF 40 Platypus olfactory receptor gene MISC \N \N \N 8200 PRF 1 XREF 5 PRF MISC \N \N \N 8300 PIR 1 XREF 5 PIR MISC \N \N \N 8400 TetNig_cdna 1 XREF 40 Genoscope tetraodon cDNA MISC \N \N \N 8500 GasAcu_cdna 1 XREF 40 Stickleback cDNA MISC \N \N \N 8600 OrnAna_454_cdna 1 XREF 40 Platypus 454 cDNA MISC \N \N \N 8700 TakRub_cdna 1 XREF 40 Takifugu cDNA MISC \N \N \N 8800 CioInt_est 1 XREF 40 Ciona intestinalis EST MISC \N \N \N 8900 CioInt_cdna 1 XREF 40 Ciona intestinalis cDNA MISC \N \N \N 9200 TakRub_est 1 XREF 40 Takifugu EST MISC \N \N \N 9400 TetNig_mouse_econtig 1 XREF 40 Genoscope mouse exofish econtig MISC \N \N \N 9410 TetNig_fugu_econtig 1 XREF 40 Genoscope fugu exofish econtig MISC \N \N \N 9420 TetNig_human_econtig 1 XREF 40 Genoscope human exofish econtig MISC \N \N \N 9450 TetNig_rat_econtig 1 XREF 40 Genoscope rat exofish econtig MISC \N \N \N 9460 TetNig_chick_econtig 1 XREF 40 Genoscope chicken exofish econtig MISC \N \N \N 9500 OryLat_est 1 XREF 40 Medaka EST MISC \N \N \N 9600 Trace_archive 1 XREF 40 Trace Archive id MISC \N \N \N 9700 CioSav_est 1 XREF 40 Ciona savignyi EST MISC \N \N \N 10000 wormbase_id 1 XREF 30 Generic exdb for WormBase id of any type for feature table MISC \N \N \N 10100 EPD 1 KNOWNXREF 5 Eukaryotic Promoter Database (Bucher) MISC \N \N \N 10300 MEROPS 1 KNOWNXREF 5 MEROPS - the Peptidase Database MISC \N \N \N 10500 TransFac 1 KNOWNXREF 5 TransFac, database of transcription factors and their binding sites MISC \N \N \N 11000 UCSC 1 KNOWNXREF 100 UCSC Stable ID MISC \N \N \N 12310 Clone_based_vega_gene 1 KNOWNXREF 5 Clone-based (Vega) MISC \N \N \N 12315 Clone_based_ensembl_gene 1 XREF 5 Clone-based (Ensembl) MISC \N \N \N 12410 Clone_based_vega_transcript 1 KNOWNXREF 5 Clone-based (Vega) MISC \N \N \N 12415 Clone_based_ensembl_transcript 1 XREF 5 Clone-based (Ensembl) MISC \N \N \N 12500 DBASS3 1 XREF 50 DataBase of Aberrant 3' Splice Sites MISC \N \N \N 12505 DBASS5 1 XREF 50 DataBase of Aberrant 5' Splice Sites MISC \N \N \N 12510 HPA 1 XREF 50 Human Protein Atlas MISC \N \N \N 12600 WikiGene 1 XREF 50 WikiGene MISC \N \N \N 12601 Tgut_symbol 1 KNOWNXREF 100 Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK PRIMARY_DB_SYNONYM \N \N \N 12620 Duck_consortium 1 XREF 0 Duck consortium MISC \N \N \N 12630 BGI_duck_transcriptome 1 XREF 0 Beijing Genomics Institute (BGI) duck transcriptome MISC \N \N \N 12700 goslim_goa 1 XREF 5 GOSlim GOA MISC \N \N \N 12710 WTSI_gorilla_transcriptome 1 XREF 0 Wellcome Trust Sanger Institute (WTSI) gorilla transcriptome MISC \N \N \N 20005 UniParc 1 KNOWNXREF 0 UniParc PRIMARY_DB_SYNONYM \N \N \N 20008 BRENDA 1 KNOWNXREF 0 BRENDA PRIMARY_DB_SYNONYM \N \N \N 20009 BioCyc 1 KNOWNXREF 0 BioCyc PRIMARY_DB_SYNONYM \N \N \N 20013 EchoBASE 1 KNOWNXREF 0 EchoBASE PRIMARY_DB_SYNONYM \N \N \N 20014 EcoGene 1 KNOWNXREF 0 EcoGene PRIMARY_DB_SYNONYM \N \N \N 20040 SubtiList 1 KNOWNXREF 0 SubtiList PRIMARY_DB_SYNONYM \N \N \N 20043 TubercuList 1 KNOWNXREF 0 TubercuList PRIMARY_DB_SYNONYM \N \N \N 20046 ArrayExpress 1 XREF 0 Expression Atlas MISC \N \N \N 20059 DIP 1 KNOWNXREF 0 DIP PRIMARY_DB_SYNONYM \N \N \N 20061 DisProt 1 KNOWNXREF 0 DisProt PRIMARY_DB_SYNONYM \N \N \N 20062 DrugBank 1 KNOWNXREF 0 DrugBank PRIMARY_DB_SYNONYM \N \N \N 20066 HAMAP 1 KNOWNXREF 0 HAMAP PRIMARY_DB_SYNONYM \N \N \N 20071 HSSP 1 KNOWNXREF 0 HSSP PRIMARY_DB_SYNONYM \N \N \N 20072 IntAct 1 KNOWNXREF 0 IntAct PRIMARY_DB_SYNONYM \N \N \N 20074 KEGG 1 KNOWNXREF 0 KEGG PRIMARY_DB_SYNONYM \N \N \N 20078 PDBsum 1 KNOWNXREF 0 PDBsum PRIMARY_DB_SYNONYM \N \N \N 20082 PeroxiBase 1 KNOWNXREF 0 PeroxiBase PRIMARY_DB_SYNONYM \N \N \N 20085 REBASE 1 KNOWNXREF 0 REBASE PRIMARY_DB_SYNONYM \N \N \N 20088 Reactome 51 KNOWNXREF 0 Reactome PRIMARY_DB_SYNONYM \N \N \N 20097 RegulonDb_Transcript 1 KNOWNXREF 0 RegulonDb PRIMARY_DB_SYNONYM \N \N \N 20101 IntEnz 1 KNOWNXREF 0 EnzymeCommission PRIMARY_DB_SYNONYM \N \N \N 20200 EMBLBANK_GENE 1 KNOWNXREF 117 European Nucleotide Archive PRIMARY_DB_SYNONYM \N \N \N 20215 phatr_jgi_v2 1 KNOWNXREF 0 JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N 20216 phatr_jgi_v2_bd_gene 1 KNOWNXREF 0 JGI Gene ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N 20217 phatr_jgi_v2_gene 1 KNOWNXREF 0 JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N 20220 thaps_jgi_v2_bd 1 KNOWNXREF 0 JGI ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N 20221 thaps_jgi_v2 1 KNOWNXREF 0 JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N 20228 CADRE_Afum_A1163 1 KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N 20301 RNAMMER 1 KNOWNXREF 0 RNAmmer MISC \N \N \N 20302 TRNASCAN_SE 1 KNOWNXREF 0 tRNAScan-SE MISC \N \N \N 20303 dictyBase 1 KNOWNXREF 0 DictyBase PRIMARY_DB_SYNONYM \N \N \N 20306 ASPGD 1 KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N 20307 ASPGD_GENE 1 KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N 20308 ASPGD_TRANSCRIPT 1 KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N 20309 CADRE 1 KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N 20310 CADRE_GENE 1 KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N 20311 CADRE_TRANSCRIPT 1 KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N 20312 SGD_GENE 1 KNOWNXREF 0 SGD PRIMARY_DB_SYNONYM \N \N \N 20313 SGD_TRANSCRIPT 1 KNOWNXREF 0 SGD PRIMARY_DB_SYNONYM \N \N \N 20317 phyra_jgi_v1.1 1.1 KNOWNXREF 0 JGI ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N 20320 physo1_jgi_v1.1 1.1 KNOWNXREF 0 JGI ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N 20325 BROAD_P_infestans 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20329 triad_jgi_v1.0_gene 1 KNOWNXREF 0 JGI Gene ID (JGI Triad 1.0) PRIMARY_DB_SYNONYM \N \N \N 20330 triad_jgi_v1.0_transcript 1 KNOWNXREF 0 JGI Transcript ID (JGI Triad 1.0) PRIMARY_DB_SYNONYM \N \N \N 20331 triad_jgi_v1.0 1 KNOWNXREF 0 JGI ID (JGI Triad 1.0) MISC \N \N \N 20334 SCHISTODB 1 KNOWNXREF 0 SchistoDB MISC \N \N \N 20337 BROAD_F_oxysporum 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20338 BROAD_F_oxysporum_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20339 BROAD_F_oxysporum_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20340 BROAD_G_zeae 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20343 BROAD_G_moniliformis 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20344 BROAD_G_moniliformis_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20345 BROAD_G_moniliformis_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20348 PGD_GENE 1 KNOWNXREF 0 Pythium genome database PRIMARY_DB_SYNONYM \N \N \N 20354 BROAD_U_maydis 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20355 BROAD_U_maydis_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20356 BROAD_U_maydis_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20357 BROAD_P_triticina 1 KNOWNXREF 0 Broad Institute MISC \N \N \N 20358 BROAD_P_triticina_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20359 BROAD_P_triticina_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20360 SpBase 1 KNOWNXREF 0 SpBase MISC \N \N \N 20362 necha_jgi_v2.0_gene 2 KNOWNXREF 0 Nectria JGI gene PRIMARY_DB_SYNONYM \N \N \N 20363 necha_jgi_v2.0_transcript 2 KNOWNXREF 0 Nectria JGI transcript PRIMARY_DB_SYNONYM \N \N \N 20364 necha_jgi_v2.0 2 KNOWNXREF 0 Nectria JGI MISC \N \N \N 20365 tuber_genoscope_gene 1 KNOWNXREF 0 Tuber Genome Browser PRIMARY_DB_SYNONYM \N \N \N 20368 Mycgr3_jgi_v2.0_gene 2 KNOWNXREF 0 Mycosphaerella JGI gene PRIMARY_DB_SYNONYM \N \N \N 20372 BROAD_P_NODORUM_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N 20377 PomBase_TRANSCRIPT 1 KNOWNXREF 0 PomBase PRIMARY_DB_SYNONYM \N \N \N 20378 PomBase_TRANSLATION 1 KNOWNXREF 0 PomBase PRIMARY_DB_SYNONYM \N \N \N 20380 CBS 1 KNOWNXREF 0 CBS Server MISC \N \N \N 20381 COG 1 KNOWNXREF 0 Cluster of Orthologous Groups (NCBI) MISC \N \N \N 20382 CGD 1 KNOWN 0 Candida Genome Database MISC \N \N \N 20383 ProSite 1 XREF 0 ProSite ID MISC \N \N \N 20385 SMART 1 XREF 0 SMART ID MISC \N \N \N 20386 SPD 1 KNOWNXREF 0 SPD ID MISC \N \N \N 20388 PBO 1 KNOWNXREF 0 PomBase Ontology ID MISC \N \N \N 20389 FYPO 1 KNOWNXREF 0 Fission Yeast Phenotype Ontology MISC \N \N \N 20390 MOD 1 KNOWNXREF 0 PSI-MOD, Post Translational Modification Ontology MISC \N \N \N 20391 AGD_GENE 1 KNOWNXREF 0 Ashbya Genome Database PRIMARY_DB_SYNONYM \N \N \N 20392 AGD_TRANSCRIPT 1 KNOWNXREF 0 Ashbya Genome Database PRIMARY_DB_SYNONYM \N \N \N 50000 BGI_EST_Cluster 1 XREF 0 EST Cluster (BGI Indica) MISC \N \N \N 50005 EC_NUMBER 1 XREF 0 Enzyme EC Number MISC \N \N \N 50010 FSTs 1 XREF 0 Flanking Sequence Tag (FST) MISC \N \N \N 50020 Gramene_Pathway 1 XREF 0 Gramene Pathway MISC \N \N \N 50035 Gramene_MarkersDB 1 XREF 0 Gramene MISC \N \N \N 50040 Gramene_MarkersDB_mRNA 1 XREF 0 GenBank mRNA (Gramene) MISC \N \N \N 50050 Gramene_MarkersDB_EST 1 XREF 0 GenBank EST (Gramene) MISC \N \N \N 50090 NASC_GENE_ID 1 XREF 1 NASC Gene ID MISC \N \N \N 50110 PlantGDB_PUT 1 XREF 1 PlantGDB Transcript MISC \N \N \N 50120 RAP_Gene 1 XREF 0 IRGSP/RAP Gene MISC \N \N \N 50140 TIGR_LOCUS 1 XREF 1 MSU/TIGR Locus MISC \N \N \N 50160 TAIR_LOCUS 1 XREF 8 TAIR MISC \N \N \N 50170 TAIR_LOCUS_MODEL 1 XREF 8 TAIR Locus (Model) MISC \N \N \N 50180 TIGR_GeneIndex 1 XREF 0 Gene Index MISC \N \N \N 50185 TO 1 XREF 0 Plant Trait Ontology MISC \N \N \N 50190 PO 1 XREF 0 Plant Structure Ontology MISC \N \N \N 50196 GO_to_gene 1 XREF 0 Gene Ontology MISC \N \N \N 50200 GRO 1 XREF 0 Plant Growth Stage MISC \N \N \N 50541 LRG 1 KNOWN 10 Locus Reference Genomic MISC \N \N \N 50542 ENS_LRG_gene 1 KNOWN 10 LRG display in Ensembl MISC \N \N \N 50543 ENS_LRG_transcript 1 KNOWN 10 LRG display in Ensembl MISC \N \N \N 50607 miRBase_trans_name 1 KNOWNXREF 5 miRBase transcript name MISC \N \N transcript name from miRBase 50608 RFAM_trans_name 1 KNOWNXREF 5 RFAM transcript name MISC \N \N transcript name from RFAM 50609 HGNC_trans_name 1 KNOWNXREF 5 HGNC transcript name MISC \N \N transcript name from HGNC 50610 MGI_trans_name 1 KNOWNXREF 5 MGI transcript name MISC \N \N transcript name from MGI 50611 ZFIN_ID_trans_name 1 KNOWNXREF 5 ZFIN transcript name MISC \N \N transcript name from ZFIN 50620 Illumina_Bodymap_transcriptome 1 XREF 0 Illumina Bodymap transcriptome MISC \N \N \N 50621 Uniprot_gn 1 KNOWN 116 UniProtKB Gene Name MISC \N \N \N 50622 GGSC 1 KNOWNXREF 0 Gibbon Genome Sequencing Consortium MISC \N \N Gibbon Genome Sequencing Consortium 50623 Broad Institute 1 KNOWN 5 Broad Institute of MIT and Harvard MISC \N \N \N 50624 PFAM 1 XREF 0 PFAM MISC \N \N Pfam from Vega 50625 SGSC 1 KNOWN 5 Swine Genome Sequencing Consortium MISC \N \N \N 50626 RIKEN 1 KNOWN 5 Riken Institute MISC \N \N \N 50627 SHSC 1 KNOWNXREF 0 Tasmanian Devil Sequencing Consortium MISC \N \N Tasmanian Devil Genome Sequencing Consortium 50628 PFAM 22 XREF 0 PFAM MISC \N \N Pfam release 22, from Vega 50629 PFAM 23 XREF 0 PFAM MISC \N \N Pfam release 23, from Vega 50630 PFAM 24 XREF 0 PFAM MISC \N \N Pfam release 24, from Vega 50631 PFAM 25 XREF 0 PFAM MISC \N \N Pfam release 25, from Vega 50632 PFAM 26 XREF 0 PFAM MISC \N \N Pfam release 26, from Vega 50633 GRC_primary_assembly 1 XREF 0 GRC primary assembly MISC \N \N Primary assembly of this species genome from the GRC 50634 Ens_Ga_gene 1 XREF 5 Ensembl Stickleback Gene MISC \N \N \N 50635 Ens_Ga_transcript 1 XREF 170 Ensembl Stickleback Transcript MISC \N \N \N 50637 CSAC 1 KNOWN 5 Chimpanzee Sequencing and Analysis Consortium MISC \N \N \N 50640 PomBase_Interaction_GENETIC 1 KNOWNXREF 5 PomBase Interaction Genetic MISC \N \N \N 50641 PomBase_Interaction_PHYSICAL 1 KNOWNXREF 5 PomBase Interaction Physical MISC \N \N \N 50642 PomBase_Gene_Name 1 KNOWNXREF 5 PomBase Gene Name MISC \N \N \N 50643 PomBase_Systematic_ID 1 KNOWNXREF 5 PomBase Systematic ID MISC \N \N \N 50644 PomBase_Ortholog 1 KNOWNXREF 5 Orthologous Gene MISC \N \N \N 50645 Ens_Ss_translation 1 XREF 5 Ensembl Pig Translation MISC \N \N \N 50646 Psinensis_sequencing_consortium 1 KNOWN 5 Pelodiscus sinensis sequencing consortium MISC \N \N \N 50647 BROAD_Magnaporthe_DB 1 KNOWNXREF 0 Magnaporthe comparative DB MISC \N \N Broad Institute Magnaporthe comparative Database 50648 BROAD_Magnaporthe_DB_GENE 1 KNOWNXREF 0 Magnaporthe comparative DB PRIMARY_DB_SYNONYM \N \N Broad Institute Magnaporthe comparative Database 50649 BROAD_Magnaporthe_DB_TRANSCRIPT 1 KNOWNXREF 0 Magnaporthe comparative DB PRIMARY_DB_SYNONYM \N \N Broad Institute Magnaporthe comparative Database 50650 BGI Shenzhen 1 KNOWN 5 Beijing Genomics Institute, Shenzhen MISC \N \N \N 50651 ICGSC 1 KNOWN 5 International Cat Genome Sequencing Consortium MISC \N \N \N 50653 WashingtonUniversity 1 KNOWN 5 The Genome Institute, Washington University School of Medicine MISC \N \N \N 50654 BDGP_cDNA 1 KNOWN 50 Fly cDNA MISC \N \N cDNA from the Berkeley Drosophila Genome Project 50655 BDGP_cDNA_Gold_Collection 1 KNOWN 50 Fly gold cDNA MISC \N \N Gold Collection cDNA from the Berkeley Drosophila Genome Project 50656 Ens_Tg_translation 1 KNOWN 5 Ensembl Zebrafinch Translation MISC \N \N \N 50658 ToxoDB 1 KNOWNXREF 1 ToxoDB PRIMARY_DB_SYNONYM \N \N Toxoplasma Genomic Resource Database. 50660 SO 1 KNOWNXREF 0 Sequence Ontology MISC \N \N Sequence Ontology 50661 BRAD_GENE 1 XREF 5 BrassEnsembl MISC \N \N The Brassica Genome Database 50662 BRAD_TRANSCRIPT 1 XREF 5 BrassEnsembl MISC \N \N The Brassica Genome Database 50663 Quick_Go 1 KNOWN 1 GOA MISC \N \N Resource to show GOA records for Uniprot Accessions 50664 Quick_Go_Evidence 1 KNOWN 1 Quick Go MISC \N \N Resource to show GOA view of original annotation sources 50666 IGDBCAS-v1.4_GENE 1.4 KNOWN 1 IGDBCAS v1.4 Gene MISC \N \N \N 50667 IGDBCAS-v1.4_TRANSCRIPT 1.4 KNOWN 1 IGDBCAS v1.4 Transcript MISC \N \N \N 50668 JGI_GENE 1 XREF 1 JGI Gene MISC \N \N gene ID/NAME in the JGI gff3 file 50669 JGI_TRANSCRIPT 1 XREF 1 JGI Transcript MISC \N \N transcript/mRNA ID/NAME in the JGI gff3 file 50672 IRGSPv1_GENE 1 KNOWNXREF 1 IRGSP v1 Gene MISC \N \N \N 50673 IRGSPv1_TRANSCRIPT 1 KNOWNXREF 1 IRGSP v1 Transcript MISC \N \N \N 50674 Ens_Lc_gene 1 XREF 5 Ensembl Coelacanth Gene MISC \N \N \N 50677 RGSC 1 KNOWNXREF 0 Rat Genome Sequencing Consortium MISC \N \N Rat Genome Sequencing Consortium 50678 BROAD_coelacanth_transcriptome 1 XREF 0 BROAD Institute coelacanth transcriptome MISC \N \N \N 50679 Ens_Ac_translation 1 XREF 40 Ensembl Anole Lizard Translation MISC \N \N \N 50682 BGI_Gene 1 XREF 50 BGI Gene MISC \N \N BGI gene identifier 50683 GeneIndex 1 XREF 50 GeneIndex MISC \N \N \N 50684 EO 1 XREF 0 Environment Ontology MISC \N \N Plant environmental conditions ontology terms. \ More information in there: \ http://www.gramene.org/plant_ontology/ontology_browse.html#eo 50687 Uppsala University 1 KNOWN 5 Uppsala University MISC \N \N \N 50688 GenBank 1 XREF 1 GenBank MISC \N \N GenBank identifier 50690 RefSeq_gene_name 1 KNOWN 200 RefSeq gene name MISC \N \N This is read out of the *.gff files provided to us by the NCBI when we do a RefSeq import or a CCDS comparison. It has the key "gene_id" and is found at the start of the 9th field. 50691 SGN 1 KNOWNXREF 1 Sol Genomics Network MISC \N \N \N 50692 GRC_alignment_import 1 XREF 0 GRC alignment import MISC \N \N Imported alignments from the Genome Reference Consortium. 50693 BROAD_monodelphis_transcriptome 1 XREF 0 Broad Institute transcriptome data for monodelphis MISC \N \N \N 50694 SIB_mondelphis_transcriptome 1 XREF 0 Swiss Institute of Bioinformatics transcriptome data for monodelphis MISC \N \N \N 50695 SIB_platypus_transcriptome 1 XREF 0 Swiss Institute of Bioinformatics transcriptome data for platypus MISC \N \N \N 50696 SIB_orangutan_transcriptome 1 XREF 0 Swiss Institute of Bioinformatics transcriptome data for orangutan MISC \N \N \N 50697 NCBI_TAXONOMY 1 KNOWNXREF 1 NCBI species MISC \N \N Organism listed in NCBI 50698 PHI 1 KNOWNXREF 1 PHI-base accession MISC \N \N Parasite-host interaction identifiers from PHI-base 50700 AnoXcel 2 KNOWN 50 AnoXcel MISC \N \N VectorBase xref. 50701 PGSC_GENE 1 XREF 1 PGSC MISC \N \N Potato Genome Sequencing Consortium database 50703 Uniprot_gn_trans_name 1 KNOWNXREF 5 UniProt transcript name MISC \N \N transcript name projected from UniProt gene name 50708 GMGC_GENE 1 KNOWNXREF 1 GMGC PRIMARY_DB_SYNONYM \N \N Global Musa Genomics Consortium gene cross-references 50709 tamu_vibs 1 KNOWN 0 TAMU VIBS MISC \N \N The Texas A&M College of Veterinary Medicine & Biomedical Sciences, Department of Veterinary Integrative Biosciences. 50710 INSDC 0 KNOWNXREF 5 International Nucleotide Sequence Database Collaboration MISC INSDC \N This external_db_id was initially made for use in the seq_region_synonym table. For species such as human, cow, dog we store chromosome names (1-22, X,Y) in the name column of the seq_region table. The INSDC accession is stored as a synonym. 50711 ISGC 1 KNOWNXREF 0 International Sheep Genome Consortium MISC \N \N International Sheep Genome Consortium 50713 TAIR_SYMBOL 10 KNOWN 60 TAIR Gene Name PRIMARY_DB_SYNONYM \N \N TAIR gene names 50715 TIGR_ID 1 XREF 1 TIGR Internal ID MISC \N \N cross-references to TIGR internal identifiers, attached to genes. 50717 GOA 1 KNOWNXREF 1 GOA MISC \N \N GOA xrefs (to UniProt identifiers) 50718 ENA_GENE 1 KNOWNXREF 1 European Nucleotide Archive MISC \N \N Cross-references to the source gene model when importing from ENA. 50719 ENA_TRANSCRIPT 1 KNOWNXREF 1 European Nucleotide Archive MISC \N \N Cross-references to the source transcript model when importing from ENA. 50720 LGBPratt_EST_Cluster 1 KNOWNXREF 1 LGBPratt_EST_Cluster MISC \N \N \N 50721 BaylorCollege 1 KNOWN 5 Baylor College of Medicine, Texas Medical Center MISC \N \N \N 50722 Rhea 1 KNOWNXREF 1 Rhea MISC \N \N Cross-references to Rhea attached to translation objects 50723 Ens_Bt_translation 1 XREF 5 Ensembl Cow Translation MISC \N \N \N 50726 ENA_FEATURE_GENE 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the gene has been inferred, when loading a genome from ENA records. 50727 ENA_FEATURE_TRANSCRIPT 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the transcript has been inferred, when loading a genome from ENA records. 50728 ENA_FEATURE_PROTEIN 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the translation has been inferred, when loading a genome from ENA records. 50730 AGP 1 KNOWN 5 Anolis Genome Project MISC \N \N \N 50731 Turkey Genome Consortium 1 KNOWN 5 Turkey Genome Consortium MISC \N \N Turkey Genome Consortium 50732 Yutaka_Satou_Kyoto_University 1 KNOWN 5 Yutaka Satou Kyoto University MISC \N \N Yutaka Satou Kyoto University 50733 Chicken_Genome_Consortium 1 KNOWN 5 International Chicken Genome Consortium MISC \N \N \N 50734 TAIR_TRANSLATION 1 XREF 1 TAIR Translation identifier MISC \N \N TAIR identifier to link to Ensembl Translation entities. \ The main requirement behind this entry, is to be able to link TAIR GO annotations to Ensembl Translation objects. 50735 AGI_GENE 1 XREF 1 AGI Gene MISC \N \N annotation provided by Arizona Genome Institute 50736 AGI_TRANSCRIPT 1 XREF 1 AGI Transcript MISC \N \N annotation provided by Arizona Genome Institute 50737 CGNC 1 KNOWNXREF 100 CGNC Symbol PRIMARY_DB_SYNONYM \N \N \N 50738 MetaCyc 1 KNOWNXREF 1 MetaCyc MISC \N \N MetaCyc database of metabolic pathways 50739 PHIP 1 KNOWNXREF 1 PHI-base phenotype ontology MISC \N \N PHI-base phenotype ontology for genes proven to affect the outcome of pathogen-host interactions 50740 PHIE 1 KNOWNXREF 1 PHI-base condition ontology MISC \N \N PHI-base experimental evidence ontology for genes proven to affect the outcome of pathogen-host interactions 50742 PubMedCentral 1 KNOWN 5 PubMedCentral LIT \N \N PMC identifier for use with PubMedCentral (http://www.ncbi.nlm.nih.gov/pmc and http://europepmc.org/) 50743 PFAM 27 XREF 0 PFAM MISC \N \N Pfam release 27, from Vega 50744 EntrezGene_trans_name 1 KNOWNXREF 250 EntrezGene transcript name MISC \N \N transcript name projected from EntrezGene gene name 50745 BROAD_M_violaceum 1 KNOWNXREF 0 Broad Institute MISC \N \N Broad Institute Microbotryum violaceum Database 50746 BROAD_M_violaceum_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N Broad Institute Microbotryum violaceum Database 50747 BROAD_M_violaceum_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N Broad Institute Microbotryum violaceum Database 50748 Ensembl_Plants 1 XREF 1 Ensembl Plants ENSEMBL \N \N Ensembl Plants identifiers serving GO projections from a reference species to other plants species. 50749 ChEMBL 1 KNOWNXREF 5 ChEMBL MISC \N \N ChEMBL external references imported via Uniprot mappings 50750 IBSC 1 KNOWNXREF 50 IBSC Gene ID MISC \N \N International Barley Sequencing Consortium gene identifier 50752 PRIDE 1 XREF 0 PRIDE MISC \N \N \N 50753 LegioList \N XREF 0 LegioList MISC \N \N Database dedicated to the analysis of the genomes of Legionella 50755 BindingDB 1 XREF 0 BindingDB MISC \N \N BindingDB is a public, web-accessible database of measured binding affinities 50756 STRING 1 XREF 0 STRING MISC \N \N STRING - Known and Predicted Protein-Protein Interactions 50757 UniPathway \N XREF 0 UniPathway MISC \N \N UniPathway is a manually curated resource of enzyme-catalyzed and spontaneous chemical reactions. 50759 SWISS_MODEL 1 XREF 0 SWISS-MODEL MISC \N \N The SWISS-MODEL Repository is a database of annotated three-dimensional comparative protein structure models generated by the fully automated homology-modelling pipeline SWISS-MODEL. 50762 CYGD 1 XREF 0 CYGD MISC \N \N The MIPS Comprehensive Yeast Genome Database (CYGD) aims to present information on the molecular structure and functional network of the entirely sequenced, well-studied model eukaryote, the budding yeast Saccharomyces cerevisiae. 50770 PseudoCAP 1 XREF 0 Pseudomonas Genome Database MISC \N \N The Pseudomonas Genome database has been a resource for peer-reviewed, continually-updated annotations for the Pseudomonas aeruginosa PAO1 reference strain's genome and, more recently, comparative analyses of several related Pseudomonas species. 50771 MINT 1 XREF 0 MINT MISC \N \N MINT, the Molecular INTeraction database, focuses on experimentally verified protein-protein interactions mined from the scientific literature by expert curators. 50772 Ant Genomes Portal 1 KNOWNXREF 0 Ant Genomes Portal MISC \N \N \N 50775 Ens_Mg_translation 1 XREF 40 Ensembl Turkey Translation MISC \N \N \N 50776 LNCC 1 XREF 30 LNCC MISC \N \N The National Laboratory of Scientific Computation (Laboratorio Nacional de Computacao Cientifica: LNCC), Brazil 50777 RGD_trans_name 1 KNOWNXREF 50 RGD transcript name MISC \N \N transcript name from RGD 50778 Xenbase_trans_name 1 KNOWNXREF 1 Xenbase transcript name MISC \N \N transcript name from Xenbase 50779 NasoniaBase 1 KNOWN 0 NasoniaBase MISC \N \N \N 50780 wormbase_gseqname 1 KNOWN 6 WormBase Gene Sequence-name MISC \N \N \N 50782 Sanger 1 KNOWN 5 Sanger Wellcome Trust Institute MISC \N \N \N 50783 ENSP_ident 1 XREF 1 Ensembl translation having exact match with Havana ALT_TRANS \N \N \N 50784 Ensembl_Metazoa 1 XREF 1 Ensembl Metazoa ENSEMBL \N \N Ensembl Metazoa identifiers serving GO projections from a reference species to other metazoa species. 50785 Ens_Mmu_translation 1 XREF 40 Ensembl Macaque Translation MISC \N \N \N 50786 PomBase_GO_AnnotationExtensions 1 KNOWN 1 PomBase GO AnnotationExtensions MISC \N \N Specific accession used by PomBase for ontology annoation extensions 50788 SP_SL 1 KNOWN 0 UniProtKB/SwissProt Subcellular Locatisation MISC \N \N UniProt Subcellular Location (http://www.uniprot.org/manual/subcellular_location) 50789 PR 1 KNOWNXREF 0 Protein Ontology MISC \N \N Protein Ontology term (previously PR) - http://pir.georgetown.edu/pro/pro.shtml 50790 PUBMED_POMBASE 1 KNOWN 1 PomBase PubMed ID LIT \N \N PomBase specific publications 50792 CL 1 KNOWNXREF 0 Cell Type Ontology MISC \N \N Cell type ontology annotations (http://cellontology.org/) 50793 ChEBI 1 KNOWNXREF 0 ChEBI Chemical Database MISC \N \N ChEBI chemical database 50794 FYPO_EXT 1 KNOWNXREF 1 FYPO Extensions MISC \N \N Annotation extension terms for the Fission Yeast Phenotype Ontology (FYPO) 50795 EcoCyc 1 KNOWNXREF 1 EcoCyc MISC \N \N Scientific database for E. coli and a division of MetaCyc (http://ecocyc.org/) 50796 PATO 1 KNOWNXREF 1 Phenotypic Qualities Ontology MISC \N \N http://obofoundry.org/wiki/index.php/PATO:Main_Page 50797 UniProtKB-KW 1 KNOWNXREF 0 UniProtKB Keywords MISC \N \N UniProtKB Keywords for describing UniProt annotations 50798 PBQ 1 KNOWNXREF 0 PomBase Quiescence Ontology MISC \N \N Used in the annotation of quiescent cell phenotypes. 50799 University of Texas 1 KNOWN 5 University of Texas MISC \N \N \N 50801 KEGG_Enzyme 1 XREF 0 KEGG MISC \N \N KEGG pathway and enzyme 50802 gfbgp 1 KNOWN 0 Glanville Fritillary Butterfly Genome Project MISC \N \N \N 50803 ensembl_internal_synonym 1 KNOWNXREF 100 Ensembl internal synonym MISC \N \N \N 50808 DOI 1 KNOWN 5 Digital Object Identifier LIT \N \N Digital Object Identifier used to uniquely identify an object such as an electronic document. 50809 zngp 1 KNOWNXREF 0 Zootermopsis nevadensis Genome Project MISC \N \N \N 50814 FGDB 1 KNOWNXREF 0 FGDB ALT_GENE \N \N MIPS Fusarium graminearum Genome Database 50815 Ensembl_Fungi 1 XREF 1 Ensembl Fungi ENSEMBL \N \N Ensembl Fungi identifiers serving GO projections from a reference species to other fungal species. 50817 RNACentral 1 KNOWNXREF 0 RNACentral PRIMARY_DB_SYNONYM \N \N Sequence identity to RNACentral ids 50818 Smar_Community_Annotation \N KNOWN 50 Strigamia maritima Community Annotation MISC \N \N \N 50819 RFAM_GENE \N KNOWN 0 Rfam Gene Name MISC \N \N Name for gene assigned from Rfam alignment 50820 PGSB_WHEAT_GENE 2.2 KNOWNXREF 1 Wheat survey sequence PGSB gene identifier MISC \N \N Bread wheat survey sequence gene models from PGSB Wheat Genome Database (formerly MIPS). Release 2.2 50821 GDEC_GENE 1.0 KNOWNXREF 1 GDEC 3B gene identifier MISC \N \N Bread wheat 3B pseudomolecule gene models from INRA GDEC group.\ 50822 ARAPORT_GENE 1 KNOWNXREF 0 Araport MISC \N \N Gene identifiers from Araport, the Arabidopsis information portal (formerly TAIR). 50823 MTGD 4.0 KNOWNXREF 0 MTGD PRIMARY_DB_SYNONYM \N \N The Medicago truncatula Genome Database (MTGD), maintained by JCVI. 50824 Reactome_gene \N KNOWNXREF 0 Reactome PRIMARY_DB_SYNONYM \N \N Reactome entries linked to genes 50825 Reactome_transcript \N KNOWNXREF 0 Reactome PRIMARY_DB_SYNONYM \N \N Reactome entries linked to transcripts 50826 PB_REF \N KNOWNXREF 1 PomBase Reference MISC \N \N Specific accession used by PomBase for source reference 50827 GEO \N XREF 0 Gene Expression Omnibus MISC \N \N \N 50828 GigaDB_A_tauschii 1 KNOWNXREF 1 Aegilops tauschii GigaDB identifier MISC \N \N Aegilops tauschii GigaDB gene identifier 50829 GeneCards \N XREF 50 GeneCards MISC \N \N \N