#==================================================
#All numbers are READ count
#==================================================

Total records:                          239400

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        2258
Unmapped reads:                         188
mapq < mapq_cut (non-unique):           1455

mapq >= mapq_cut (unique):              235499
Read-1:                                 117756
Read-2:                                 117743
Reads map to '+':                       117751
Reads map to '-':                       117748
Non-splice reads:                       213104
Splice reads:                           22395
Reads mapped in proper pairs:           234730
Proper-paired reads map to different chrom:0