#==================================================
#All numbers are READ count
#==================================================

Total records:                          292490

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        2838
Unmapped reads:                         215
mapq < mapq_cut (non-unique):           1890

mapq >= mapq_cut (unique):              287547
Read-1:                                 143765
Read-2:                                 143782
Reads map to '+':                       143769
Reads map to '-':                       143778
Non-splice reads:                       260288
Splice reads:                           27259
Reads mapped in proper pairs:           286528
Proper-paired reads map to different chrom:0