#==================================================
#All numbers are READ count
#==================================================

Total records:                          262073

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        2501
Unmapped reads:                         204
mapq < mapq_cut (non-unique):           1628

mapq >= mapq_cut (unique):              257740
Read-1:                                 128881
Read-2:                                 128859
Reads map to '+':                       128867
Reads map to '-':                       128873
Non-splice reads:                       233548
Splice reads:                           24192
Reads mapped in proper pairs:           256920
Proper-paired reads map to different chrom:0