#==================================================
#All numbers are READ count
#==================================================

Total records:                          464150

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        9366
Unmapped reads:                         510
mapq < mapq_cut (non-unique):           7594

mapq >= mapq_cut (unique):              446680
Read-1:                                 223375
Read-2:                                 223305
Reads map to '+':                       223292
Reads map to '-':                       223388
Non-splice reads:                       400295
Splice reads:                           46385
Reads mapped in proper pairs:           444982
Proper-paired reads map to different chrom:0