#==================================================
#All numbers are READ count
#==================================================

Total records:                          332144

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        7398
Unmapped reads:                         324
mapq < mapq_cut (non-unique):           5399

mapq >= mapq_cut (unique):              319023
Read-1:                                 159535
Read-2:                                 159488
Reads map to '+':                       159496
Reads map to '-':                       159527
Non-splice reads:                       289476
Splice reads:                           29547
Reads mapped in proper pairs:           317456
Proper-paired reads map to different chrom:0