#==================================================
#All numbers are READ count
#==================================================

Total records:                          378661

QC failed:                              0
Optical/PCR duplicate:                  0
Non primary hits                        7777
Unmapped reads:                         378
mapq < mapq_cut (non-unique):           6025

mapq >= mapq_cut (unique):              364481
Read-1:                                 182257
Read-2:                                 182224
Reads map to '+':                       182226
Reads map to '-':                       182255
Non-splice reads:                       327187
Splice reads:                           37294
Reads mapped in proper pairs:           362600
Proper-paired reads map to different chrom:0