FastQCFastQC Report
Sat 16 Nov 2024
UHR_Rep1.bam

Summary

[OK]Basic Statistics

MeasureValue
FilenameUHR_Rep1.bam
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464150
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTATTGAGTGCAGGGAGAAGGGCTTGATGCCTTGGGGTGGGAGGAGAG5370.11569535710438436No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)