Sample	properly paired_passed_pct	total_failed	paired in sequencing_failed	with mate mapped to a different chr_failed	singletons_passed	duplicates_failed	supplementary_passed	properly paired_failed	total_passed	singletons_passed_pct	mapped_passed_pct	with mate mapped to a different chr (mapQ >= 5)_passed	read2_passed	secondary_passed	properly paired_passed	singletons_failed_pct	read2_failed	paired in sequencing_passed	mapped_passed	duplicates_passed	read1_failed	flagstat_total	mapped_failed_pct	properly paired_failed_pct	with itself and mate mapped_failed	read1_passed	with mate mapped to a different chr_passed	supplementary_failed	singletons_failed	with itself and mate mapped_passed	mapped_failed	secondary_failed	with mate mapped to a different chr (mapQ >= 5)_failed
HBR_Rep1	99.59	0	0	0	86	0	0	0	239400	0.04	99.92	0	118571	2258	236176	nan	0	237142	239212	0	0	239400	nan	nan	0	118571	0	0	0	236868	0	0	0
HBR_Rep2	99.57	0	0	0	89	0	0	0	292490	0.03	99.93	0	144826	2838	288408	nan	0	289652	292275	0	0	292490	nan	nan	0	144826	0	0	0	289348	0	0	0
HBR_Rep3	99.6	0	0	0	88	0	0	0	262073	0.03	99.92	0	129786	2501	258540	nan	0	259572	261869	0	0	262073	nan	nan	0	129786	0	0	0	259280	0	0	0
UHR_Rep1	99.49	0	0	0	278	0	0	0	464150	0.06	99.89	4	227392	9366	452474	nan	0	454784	463640	0	0	464150	nan	nan	0	227392	4	0	0	453996	0	0	0
UHR_Rep2	99.41	0	0	0	150	0	0	0	332144	0.05	99.9	0	162373	7398	322816	nan	0	324746	331820	0	0	332144	nan	nan	0	162373	0	0	0	324272	0	0	0
UHR_Rep3	99.38	0	0	0	176	0	0	0	378661	0.05	99.9	2	185442	7777	368570	nan	0	370884	378283	0	0	378661	nan	nan	0	185442	2	0	0	370330	0	0	0