Module	Section	Sample Name	Source
RSeQC	read_distribution	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep2.bam.read_dist.txt
RSeQC	read_distribution	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep1.bam.read_dist.txt
RSeQC	read_distribution	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep2.bam.read_dist.txt
RSeQC	read_distribution	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep3.bam.read_dist.txt
RSeQC	read_distribution	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep1.bam.read_dist.txt
RSeQC	read_distribution	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep3.bam.read_dist.txt
RSeQC	gene_body_coverage	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/HBR.geneBodyCoverage.txt
RSeQC	gene_body_coverage	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/HBR.geneBodyCoverage.txt
RSeQC	gene_body_coverage	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/HBR.geneBodyCoverage.txt
RSeQC	gene_body_coverage	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/UHR.geneBodyCoverage.txt
RSeQC	gene_body_coverage	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/UHR.geneBodyCoverage.txt
RSeQC	gene_body_coverage	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/UHR.geneBodyCoverage.txt
RSeQC	inner_distance	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep3.bam.inner_distance_freq.txt
RSeQC	inner_distance	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep1.bam.inner_distance_freq.txt
RSeQC	inner_distance	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep3.bam.inner_distance_freq.txt
RSeQC	inner_distance	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep2.bam.inner_distance_freq.txt
RSeQC	inner_distance	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep1.bam.inner_distance_freq.txt
RSeQC	inner_distance	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep2.bam.inner_distance_freq.txt
RSeQC	junction_saturation	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep1.bam.junctionSaturation_plot.r
RSeQC	junction_saturation	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep2.bam.junctionSaturation_plot.r
RSeQC	junction_saturation	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep2.bam.junctionSaturation_plot.r
RSeQC	junction_saturation	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/UHR_Rep3.bam.junctionSaturation_plot.r
RSeQC	junction_saturation	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep1.bam.junctionSaturation_plot.r
RSeQC	junction_saturation	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/rseqc/HBR_Rep3.bam.junctionSaturation_plot.r
RSeQC	bam_stat	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/HBR_Rep3.bam.bam_stat.txt
RSeQC	bam_stat	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/HBR_Rep1.bam.bam_stat.txt
RSeQC	bam_stat	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/UHR_Rep3.bam.bam_stat.txt
RSeQC	bam_stat	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/UHR_Rep1.bam.bam_stat.txt
RSeQC	bam_stat	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/HBR_Rep2.bam.bam_stat.txt
RSeQC	bam_stat	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/UHR_Rep2.bam.bam_stat.txt
Picard	RnaSeqMetrics	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/picard/UHR_Rep2.bam.RNA_Metrics
Picard	RnaSeqMetrics	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/picard/UHR_Rep3.bam.RNA_Metrics
Picard	RnaSeqMetrics	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/picard/UHR_Rep1.bam.RNA_Metrics
Picard	RnaSeqMetrics	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/picard/HBR_Rep3.bam.RNA_Metrics
Picard	RnaSeqMetrics	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/picard/HBR_Rep2.bam.RNA_Metrics
Picard	RnaSeqMetrics	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/picard/HBR_Rep1.bam.RNA_Metrics
Samtools	flagstat	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/flagstat/UHR_Rep1.bam.flagstat
Samtools	flagstat	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/flagstat/UHR_Rep2.bam.flagstat
Samtools	flagstat	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/flagstat/HBR_Rep1.bam.flagstat
Samtools	flagstat	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/flagstat/UHR_Rep3.bam.flagstat
Samtools	flagstat	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/flagstat/HBR_Rep2.bam.flagstat
Samtools	flagstat	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/flagstat/HBR_Rep3.bam.flagstat
FastQC	all_sections	HBR_Rep1	/workspace/rnaseq/alignments/hisat2/fastqc/HBR_Rep1_fastqc.zip
FastQC	all_sections	HBR_Rep2	/workspace/rnaseq/alignments/hisat2/fastqc/HBR_Rep2_fastqc.zip
FastQC	all_sections	UHR_Rep3	/workspace/rnaseq/alignments/hisat2/fastqc/UHR_Rep3_fastqc.zip
FastQC	all_sections	UHR_Rep2	/workspace/rnaseq/alignments/hisat2/fastqc/UHR_Rep2_fastqc.zip
FastQC	all_sections	UHR_Rep1	/workspace/rnaseq/alignments/hisat2/fastqc/UHR_Rep1_fastqc.zip
FastQC	all_sections	HBR_Rep3	/workspace/rnaseq/alignments/hisat2/fastqc/HBR_Rep3_fastqc.zip