Index of /rnaseq/student_tools/bedtools2/obj

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]windowMakerMain.o2024-11-15 11:38 334K 
[TXT]windowMakerMain.d2024-11-15 11:38 1.7K 
[ ]windowMaker.o2024-11-15 11:38 859K 
[TXT]windowMaker.d2024-11-15 11:38 1.6K 
[ ]windowMain.o2024-11-15 11:38 602K 
[TXT]windowMain.d2024-11-15 11:38 1.7K 
[ ]windowBed.o2024-11-15 11:38 1.8M 
[TXT]windowBed.d2024-11-15 11:38 1.7K 
[ ]version.o2024-11-15 11:38 2.8K 
[TXT]version.d2024-11-15 11:38 170  
[ ]unionBedGraphsMain.o2024-11-15 11:38 403K 
[TXT]unionBedGraphsMain.d2024-11-15 11:38 1.7K 
[ ]unionBedGraphs.o2024-11-15 11:38 1.0M 
[TXT]unionBedGraphs.d2024-11-15 11:38 1.6K 
[ ]tagBamMain.o2024-11-15 11:38 724K 
[TXT]tagBamMain.d2024-11-15 11:38 1.9K 
[ ]tagBam.o2024-11-15 11:38 1.8M 
[TXT]tagBam.d2024-11-15 11:38 1.8K 
[ ]tabFile.o2024-11-15 11:39 316K 
[TXT]tabFile.d2024-11-15 11:39 330  
[ ]summaryHelp.o2024-11-15 11:38 76K 
[TXT]summaryHelp.d2024-11-15 11:38 174  
[ ]summaryFile.o2024-11-15 11:38 955K 
[TXT]summaryFile.d2024-11-15 11:38 5.8K 
[ ]subtractHelp.o2024-11-15 11:38 94K 
[TXT]subtractHelp.d2024-11-15 11:38 177  
[ ]subtractFile.o2024-11-15 11:38 583K 
[TXT]subtractFile.d2024-11-15 11:38 6.4K 
[ ]splitBedMain.o2024-11-15 11:38 158K 
[TXT]splitBedMain.d2024-11-15 11:38 447  
[ ]splitBed.o2024-11-15 11:38 2.0M 
[TXT]splitBed.d2024-11-15 11:38 496  
[ ]split.o2024-11-15 11:39 326K 
[TXT]split.d2024-11-15 11:39 88  
[ ]spacingHelp.o2024-11-15 11:38 99K 
[TXT]spacingHelp.d2024-11-15 11:38 174  
[ ]spacingFile.o2024-11-15 11:38 587K 
[TXT]spacingFile.d2024-11-15 11:38 5.8K 
[ ]sortMain.o2024-11-15 11:38 522K 
[TXT]sortMain.d2024-11-15 11:38 500  
[ ]sortBed.o2024-11-15 11:38 2.0M 
[TXT]sortBed.d2024-11-15 11:38 438  
[ ]slopBedMain.o2024-11-15 11:38 627K 
[TXT]slopBedMain.d2024-11-15 11:38 1.6K 
[ ]slopBed.o2024-11-15 11:38 639K 
[TXT]slopBed.d2024-11-15 11:38 1.6K 
[ ]shuffleBedMain.o2024-11-15 11:38 684K 
[TXT]shuffleBedMain.d2024-11-15 11:38 1.7K 
[ ]shuffleBed.o2024-11-15 11:38 1.4M 
[TXT]shuffleBed.d2024-11-15 11:38 1.6K 
[ ]shiftBedMain.o2024-11-15 11:38 603K 
[TXT]shiftBedMain.d2024-11-15 11:38 1.6K 
[ ]shiftBed.o2024-11-15 11:38 626K 
[TXT]shiftBed.d2024-11-15 11:38 1.6K 
[ ]sequenceUtils.o2024-11-15 11:39 148K 
[TXT]sequenceUtils.d2024-11-15 11:39 159  
[ ]sampleHelp.o2024-11-15 11:38 106K 
[TXT]sampleHelp.d2024-11-15 11:38 171  
[ ]sampleFile.o2024-11-15 11:38 656K 
[TXT]sampleFile.d2024-11-15 11:38 5.8K 
[ ]reldistMain.o2024-11-15 11:38 610K 
[TXT]reldistMain.d2024-11-15 11:38 1.9K 
[ ]reldist.o2024-11-15 11:38 1.0M 
[TXT]reldist.d2024-11-15 11:38 1.8K 
[ ]regressTestMain.o2024-11-15 11:38 248K 
[TXT]regressTestMain.d2024-11-15 11:38 123  
[ ]randomBedMain.o2024-11-15 11:37 310K 
[TXT]randomBedMain.d2024-11-15 11:37 1.4K 
[ ]randomBed.o2024-11-15 11:37 257K 
[TXT]randomBed.d2024-11-15 11:37 1.3K 
[ ]pairToPairMain.o2024-11-15 11:37 337K 
[TXT]pairToPairMain.d2024-11-15 11:37 595  
[ ]pairToPair.o2024-11-15 11:37 1.2M 
[TXT]pairToPair.d2024-11-15 11:37 527  
[ ]pairToBedMain.o2024-11-15 11:37 726K 
[TXT]pairToBedMain.d2024-11-15 11:37 1.8K 
[ ]pairToBed.o2024-11-15 11:37 2.9M 
[TXT]pairToBed.d2024-11-15 11:37 1.7K 
[ ]nucBedMain.o2024-11-15 11:37 471K 
[TXT]nucBedMain.d2024-11-15 11:37 766  
[ ]nucBed.o2024-11-15 11:37 700K 
[TXT]nucBed.d2024-11-15 11:37 695  
[ ]multiIntersectBedMain.o2024-11-15 11:37 407K 
[TXT]multiIntersectBedMain.d2024-11-15 11:37 1.7K 
[ ]multiIntersectBed.o2024-11-15 11:37 1.3M 
[TXT]multiIntersectBed.d2024-11-15 11:37 1.7K 
[ ]multiBamCovMain.o2024-11-15 11:37 639K 
[TXT]multiBamCovMain.d2024-11-15 11:37 1.8K 
[ ]multiBamCov.o2024-11-15 11:37 1.8M 
[TXT]multiBamCov.d2024-11-15 11:37 1.7K 
[ ]mergeHelp.o2024-11-15 11:37 102K 
[TXT]mergeHelp.d2024-11-15 11:37 931  
[ ]mergeFile.o2024-11-15 11:37 502K 
[TXT]mergeFile.d2024-11-15 11:37 5.8K 
[ ]maskFastaFromBedMain.o2024-11-15 11:37 486K 
[TXT]maskFastaFromBedMain.d2024-11-15 11:37 713  
[ ]maskFastaFromBed.o2024-11-15 11:37 1.0M 
[TXT]maskFastaFromBed.d2024-11-15 11:37 645  
[ ]mapHelp.o2024-11-15 11:37 65K 
[TXT]mapHelp.d2024-11-15 11:37 922  
[ ]mapFile.o2024-11-15 11:37 479K 
[TXT]mapFile.d2024-11-15 11:37 6.3K 
[ ]linksMain.o2024-11-15 11:37 486K 
[TXT]linksMain.d2024-11-15 11:37 507  
[ ]linksBed.o2024-11-15 11:37 722K 
[TXT]linksBed.d2024-11-15 11:37 445  
[ ]kfunc.o2024-11-15 11:37 35K 
[TXT]kfunc.d2024-11-15 11:37 73  
[ ]jaccardHelp.o2024-11-15 11:37 68K 
[TXT]jaccardHelp.d2024-11-15 11:37 170  
[ ]jaccard.o2024-11-15 11:37 505K 
[TXT]jaccard.d2024-11-15 11:37 6.3K 
[ ]intersectHelp.o2024-11-15 11:37 73K 
[TXT]intersectHelp.d2024-11-15 11:37 180  
[ ]intersectFile.o2024-11-15 11:37 616K 
[TXT]intersectFile.d2024-11-15 11:37 6.3K 
[ ]gzstream.o2024-11-15 11:39 155K 
[ ]groupByHelp.o2024-11-15 11:37 80K 
[TXT]groupByHelp.d2024-11-15 11:37 170  
[ ]groupBy.o2024-11-15 11:37 681K 
[TXT]groupBy.d2024-11-15 11:37 5.9K 
[ ]getOverlap.o2024-11-15 11:37 375K 
[TXT]getOverlap.d2024-11-15 11:37 462  
[ ]genomeCoverageMain.o2024-11-15 11:37 949K 
[TXT]genomeCoverageMain.d2024-11-15 11:37 1.9K 
[ ]genomeCoverageBed.o2024-11-15 11:37 2.4M 
[TXT]genomeCoverageBed.d2024-11-15 11:37 1.8K 
[ ]flankBedMain.o2024-11-15 11:37 619K 
[TXT]flankBedMain.d2024-11-15 11:37 1.6K 
[ ]flankBed.o2024-11-15 11:37 846K 
[TXT]flankBed.d2024-11-15 11:37 1.6K 
[ ]fisherHelp.o2024-11-15 11:37 69K 
[TXT]fisherHelp.d2024-11-15 11:37 167  
[ ]fisher.o2024-11-15 11:37 914K 
[TXT]fisher.d2024-11-15 11:37 6.8K 
[ ]fileType.o2024-11-15 11:39 87K 
[TXT]fileType.d2024-11-15 11:39 112  
[ ]fastaFromBedMain.o2024-11-15 11:37 489K 
[TXT]fastaFromBedMain.d2024-11-15 11:37 1.7K 
[ ]fastaFromBed.o2024-11-15 11:37 1.0M 
[TXT]fastaFromBed.d2024-11-15 11:37 1.7K 
[ ]expand.o2024-11-15 11:37 767K 
[TXT]expand.d2024-11-15 11:37 443  
[ ]coverageHelp.o2024-11-15 11:37 109K 
[TXT]coverageHelp.d2024-11-15 11:37 177  
[ ]coverageFile.o2024-11-15 11:37 903K 
[TXT]coverageFile.d2024-11-15 11:37 6.4K 
[ ]complementHelp.o2024-11-15 11:37 99K 
[TXT]complementHelp.d2024-11-15 11:37 183  
[ ]complementFile.o2024-11-15 11:37 737K 
[TXT]complementFile.d2024-11-15 11:37 5.8K 
[ ]clusterMain.o2024-11-15 11:37 445K 
[TXT]clusterMain.d2024-11-15 11:37 521  
[ ]clusterBed.o2024-11-15 11:37 832K 
[TXT]clusterBed.d2024-11-15 11:37 462  
[ ]closestHelp.o2024-11-15 11:37 200K 
[TXT]closestHelp.d2024-11-15 11:37 174  
[ ]closestFile.o2024-11-15 11:37 484K 
[TXT]closestFile.d2024-11-15 11:37 6.5K 
[ ]chromsweep.o2024-11-15 11:38 1.7M 
[TXT]chromsweep.d2024-11-15 11:38 480  
[ ]bedtools.o2024-11-15 11:37 775K 
[TXT]bedtools.d2024-11-15 11:37 5.7K 
[ ]bedpeToBam.o2024-11-15 11:37 1.6M 
[TXT]bedpeToBam.d2024-11-15 11:37 1.8K 
[ ]bedToIgv.o2024-11-15 11:37 1.1M 
[TXT]bedToIgv.d2024-11-15 11:37 1.6K 
[ ]bedToBam.o2024-11-15 11:37 1.4M 
[TXT]bedToBam.d2024-11-15 11:37 1.7K 
[ ]bedGraphFile.o2024-11-15 11:38 158K 
[TXT]bedGraphFile.d2024-11-15 11:38 365  
[ ]bedFilePE.o2024-11-15 11:39 1.9M 
[TXT]bedFilePE.d2024-11-15 11:39 473  
[ ]bedFile.o2024-11-15 11:38 4.3M 
[TXT]bedFile.d2024-11-15 11:38 399  
[ ]bed12ToBed6.o2024-11-15 11:37 613K 
[TXT]bed12ToBed6.d2024-11-15 11:37 1.4K 
[ ]bamToFastqMain.o2024-11-15 11:37 249K 
[TXT]bamToFastqMain.d2024-11-15 11:37 1.3K 
[ ]bamToFastq.o2024-11-15 11:37 1.9M 
[TXT]bamToFastq.d2024-11-15 11:37 1.3K 
[ ]bamToBed.o2024-11-15 11:37 2.2M 
[TXT]bamToBed.d2024-11-15 11:37 1.7K 
[ ]annotateMain.o2024-11-15 11:37 607K 
[TXT]annotateMain.d2024-11-15 11:37 528  
[ ]annotateBed.o2024-11-15 11:37 1.0M 
[TXT]annotateBed.d2024-11-15 11:37 469  
[ ]VectorOps.o2024-11-15 11:39 1.9M 
[TXT]VectorOps.d2024-11-15 11:39 119  
[ ]VcfRecord.o2024-11-15 11:38 466K 
[TXT]VcfRecord.d2024-11-15 11:38 2.8K 
[ ]ToolBase.o2024-11-15 11:39 92K 
[TXT]ToolBase.d2024-11-15 11:39 5.6K 
[ ]Tokenizer.o2024-11-15 11:39 313K 
[TXT]Tokenizer.d2024-11-15 11:39 113  
[ ]StrandQueue.o2024-11-15 11:38 292K 
[TXT]StrandQueue.d2024-11-15 11:38 666  
[ ]SingleLineDelimTextFileReader.o2024-11-15 11:38 891K 
[TXT]SingleLineDelimTextFileReader.d2024-11-15 11:38 2.3K 
[ ]RegressTest.o2024-11-15 11:38 1.6M 
[TXT]RegressTest.d2024-11-15 11:38 2.4K 
[ ]RecordOutputMgr.o2024-11-15 11:39 1.1M 
[TXT]RecordOutputMgr.d2024-11-15 11:39 7.0K 
[ ]RecordMgr.o2024-11-15 11:38 2.2M 
[TXT]RecordMgr.d2024-11-15 11:38 3.1K 
[ ]RecordList.o2024-11-15 11:38 51K 
[TXT]RecordList.d2024-11-15 11:38 662  
[ ]RecordKeyVector.o2024-11-15 11:38 201K 
[TXT]RecordKeyVector.d2024-11-15 11:38 685  
[ ]RecordKeyList.o2024-11-15 11:38 48K 
[TXT]RecordKeyList.d2024-11-15 11:38 772  
[ ]Record.o2024-11-15 11:38 490K 
[TXT]Record.d2024-11-15 11:38 556  
[ ]PushBackStreamBuf.o2024-11-15 11:39 111K 
[TXT]PushBackStreamBuf.d2024-11-15 11:39 262  
[ ]PlusFields.o2024-11-15 11:38 197K 
[TXT]PlusFields.d2024-11-15 11:38 2.3K 
[ ]ParseTools.o2024-11-15 11:39 227K 
[TXT]ParseTools.d2024-11-15 11:39 117  
[ ]NoPosPlusRecord.o2024-11-15 11:38 409K 
[TXT]NoPosPlusRecord.d2024-11-15 11:38 2.5K 
[ ]NewGenomeFile.o2024-11-15 11:39 836K 
[TXT]NewGenomeFile.d2024-11-15 11:39 1.4K 
[ ]NewChromsweep.o2024-11-15 11:39 1.1M 
[TXT]NewChromsweep.d2024-11-15 11:39 5.8K 
[ ]KeyListOpsMethods.o2024-11-15 11:39 1.6M 
[TXT]KeyListOpsMethods.d2024-11-15 11:39 825  
[ ]KeyListOps.o2024-11-15 11:39 1.6M 
[TXT]KeyListOps.d2024-11-15 11:39 4.8K 
[ ]InputStreamMgr.o2024-11-15 11:38 1.1M 
[TXT]InputStreamMgr.d2024-11-15 11:38 1.7K 
[ ]GffRecord.o2024-11-15 11:38 567K 
[TXT]GffRecord.d2024-11-15 11:38 2.7K 
[ ]GffPlusRecord.o2024-11-15 11:38 419K 
[TXT]GffPlusRecord.d2024-11-15 11:38 2.9K 
[ ]GenomeFile.o2024-11-15 11:39 748K 
[TXT]GenomeFile.d2024-11-15 11:39 1.3K 
[ ]FileRecordTypeChecker.o2024-11-15 11:39 1.5M 
[TXT]FileRecordTypeChecker.d2024-11-15 11:39 1.5K 
[ ]FileRecordMgr.o2024-11-15 11:38 904K 
[TXT]FileRecordMgr.d2024-11-15 11:38 4.9K 
[ ]FileRecordMergeMgr.o2024-11-15 11:38 554K 
[TXT]FileRecordMergeMgr.d2024-11-15 11:38 4.9K 
[ ]FileReader.o2024-11-15 11:38 529K 
[TXT]FileReader.d2024-11-15 11:38 1.9K 
[ ]Fasta.o2024-11-15 11:39 1.5M 
[TXT]Fasta.d2024-11-15 11:39 565  
[ ]ErrorMsg.o2024-11-15 11:39 1.4K 
[TXT]ErrorMsg.d2024-11-15 11:39 109  
[ ]EmptyRecord.o2024-11-15 11:38 393K 
[TXT]EmptyRecord.d2024-11-15 11:38 2.4K 
[ ]ContextSummary.o2024-11-15 11:39 159K 
[TXT]ContextSummary.d2024-11-15 11:39 5.4K 
[ ]ContextSubtract.o2024-11-15 11:39 185K 
[TXT]ContextSubtract.d2024-11-15 11:39 5.4K 
[ ]ContextSpacing.o2024-11-15 11:38 157K 
[TXT]ContextSpacing.d2024-11-15 11:38 5.4K 
[ ]ContextSample.o2024-11-15 11:38 194K 
[TXT]ContextSample.d2024-11-15 11:38 5.4K 
[ ]ContextMerge.o2024-11-15 11:38 883K 
[TXT]ContextMerge.d2024-11-15 11:38 5.4K 
[ ]ContextMap.o2024-11-15 11:38 190K 
[TXT]ContextMap.d2024-11-15 11:38 5.4K 
[ ]ContextJaccard.o2024-11-15 11:39 184K 
[TXT]ContextJaccard.d2024-11-15 11:39 5.4K 
[ ]ContextIntersect.o2024-11-15 11:38 912K 
[TXT]ContextIntersect.d2024-11-15 11:38 5.4K 
[ ]ContextGroupBy.o2024-11-15 11:39 863K 
[TXT]ContextGroupBy.d2024-11-15 11:39 5.4K 
[ ]ContextFisher.o2024-11-15 11:38 213K 
[TXT]ContextFisher.d2024-11-15 11:38 5.6K 
[ ]ContextCoverage.o2024-11-15 11:39 194K 
[TXT]ContextCoverage.d2024-11-15 11:39 5.4K 
[ ]ContextComplement.o2024-11-15 11:39 172K 
[TXT]ContextComplement.d2024-11-15 11:39 5.4K 
[ ]ContextClosest.o2024-11-15 11:39 327K 
[TXT]ContextClosest.d2024-11-15 11:39 5.4K 
[ ]ContextBase.o2024-11-15 11:38 2.5M 
[TXT]ContextBase.d2024-11-15 11:38 5.3K 
[ ]CompressionTools.o2024-11-15 11:39 79K 
[TXT]CompressionTools.d2024-11-15 11:39 258  
[ ]CommonHelp.o2024-11-15 11:39 278K 
[TXT]CommonHelp.d2024-11-15 11:39 174  
[ ]CloseSweep.o2024-11-15 11:39 946K 
[TXT]CloseSweep.d2024-11-15 11:39 5.9K 
[ ]BufferedStreamMgr.o2024-11-15 11:38 742K 
[TXT]BufferedStreamMgr.d2024-11-15 11:38 1.9K 
[ ]BlockedIntervals.o2024-11-15 11:39 1.2M 
[TXT]BlockedIntervals.d2024-11-15 11:39 1.4K 
[ ]BlockMgr.o2024-11-15 11:38 613K 
[TXT]BlockMgr.d2024-11-15 11:38 3.3K 
[ ]BinTree.o2024-11-15 11:38 618K 
[TXT]BinTree.d2024-11-15 11:38 5.7K 
[ ]BedtoolsDriver.o2024-11-15 11:39 827K 
[TXT]BedtoolsDriver.d2024-11-15 11:39 8.4K 
[ ]BedPlusInterval.o2024-11-15 11:38 444K 
[TXT]BedPlusInterval.d2024-11-15 11:38 2.7K 
[ ]BedGraphInterval.o2024-11-15 11:38 406K 
[TXT]BedGraphInterval.d2024-11-15 11:38 2.6K 
[ ]Bed12Interval.o2024-11-15 11:38 640K 
[TXT]Bed12Interval.d2024-11-15 11:38 2.7K 
[ ]Bed6Interval.o2024-11-15 11:38 420K 
[TXT]Bed6Interval.d2024-11-15 11:38 2.6K 
[ ]Bed5Interval.o2024-11-15 11:38 412K 
[TXT]Bed5Interval.d2024-11-15 11:38 2.6K 
[ ]Bed4Interval.o2024-11-15 11:38 408K 
[TXT]Bed4Interval.d2024-11-15 11:38 2.6K 
[ ]Bed3Interval.o2024-11-15 11:38 513K 
[TXT]Bed3Interval.d2024-11-15 11:38 2.5K 
[ ]BamRecord.o2024-11-15 11:38 831K 
[TXT]BamRecord.d2024-11-15 11:38 2.7K 
[ ]BamFileReader.o2024-11-15 11:38 718K 
[TXT]BamFileReader.d2024-11-15 11:38 2.1K 
[ ]BamAncillary.o2024-11-15 11:39 1.2M 
[TXT]BamAncillary.d2024-11-15 11:39 1.4K 
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